**v.0.4.5**
Pre-releasev.0.4.5
-
temporary fix to
tidy_genomic_data
to read unconventional Tassel VCF -
new function
ibdg_fh
computes the FH measure that was previously
computed insummary_haplotypes
.
It now works with biallelic and multiallelic data.The FH measure is based on the excess in the observed number of homozygous
genotypes within an individual relative to the mean number of homozygous
genotypes expected under random mating (see function for details). TheIBDg
in
the name is because the measure is a proxy of the realized proportion of the genome
that is identical by descent by reference to the current population
under hypothetical random mating. -
missing_visualization
now computes the FH measure and look for correlation
with average missingness per individual. -
tidy_stacks_haplotypes_vcf
is now deprecated in favor of usingtidy_genomic_data
that will import haplotypic vcf files.