update

thierrygosselin · Sep 2, 2015 · baa746d · baa746d
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diff --git a/R/haplo2colony.R b/R/haplo2colony.R
@@ -1,4 +1,4 @@
-# From STACKS haplotypes file wirte COLONY input files to the working directory
+# From STACKS haplotypes file write COLONY input files to the working directory
 
 # to get rid of notes in build check
 if(getRversion() >= "2.15.1")  utils::globalVariables(c("Catalog ID", "Catalog.ID", "Catalog.ID = LOCUS", "Catalog.ID = `Catalog ID`", "Cnt", "HAPLOTYPES", "SAMPLES", "ALLELE", "ALLELE1", "ALLELE2", "GENOTYPE", "NUCLEOTIDES", "INDIVIDUALS", "POP_ID", "POLYMORPHISM", "POLYMORPHISM_MAX", "other", "strata", "hierarchy", "GROUP", "N", "."))

diff --git a/README.md b/README.md
@@ -56,7 +56,8 @@ This however requires manual curation of the file to work directly with COLONY.
 
 ## Roadmap of future developments:
 
-* Very soon: Joint Allele Frequency Spectrum from a *batch_x.sumstats.tsv* or a *batch_x.haplotypes.tsv* files
+* Very soon: Map-independent imputation of a VCF using Random Forest or the 
+most frequent category and Joint Allele Frequency Spectrum from a *batch_x.sumstats.tsv* or a *batch_x.haplotypes.tsv* files
 * Re-Integration with [strataG] (https://github.com/EricArcher/strataG.devel/tree/master/strataG.devel)
 * Improved documentation and vignette
 * Workflow tutorial