TVB-2113: add bin path to modify distribution python path #538
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name: Check tvb-contrib | |
on: [push] | |
jobs: | |
build: | |
name: Test tvb-contrib | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis | |
- name: set up Python 3.11 | |
uses: actions/setup-python@v4 | |
id: setPy | |
with: | |
python-version: "3.11" | |
- name: put ~/.local/bin on $PATH | |
run: echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV | |
- name: install tools and dependencies | |
run: | | |
sudo apt-get update | |
sudo apt install libbz2-dev libhdf5-serial-dev liblzo2-dev | |
python3 -m pip install --upgrade setuptools==59.8.0 pip wheel | |
pip3 install --user --upgrade "numpy<2" | |
python3 -m pip install scikit-build pytest | |
pip3 install --user --no-build-isolation tvb-gdist | |
cd tvb_library | |
pip install -e . --user | |
- name: cache data | |
id: cache-data | |
uses: actions/cache@v3 | |
with: | |
path: tvb_data | |
key: tvb-data | |
- name: download data | |
if: steps.cache-data.outputs.cache-hit != 'true' | |
run: | | |
wget -q https://zenodo.org/record/10128131/files/tvb_data.zip?download=1 -O tvb_data.zip | |
mkdir tvb_data | |
unzip tvb_data.zip -d tvb_data | |
rm tvb_data.zip | |
- name: setup data | |
run: | | |
cd tvb_data | |
python3 setup.py develop | |
- name: run contrib tests | |
run: | | |
cd tvb_contrib | |
pip install -e . --user | |
pytest tvb | |