TVB-2113: add bin path to modify distribution python path #766
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Test Notebooks | |
on: [push] | |
jobs: | |
build: | |
name: Test and Inspect | |
runs-on: windows-latest | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis | |
- name: set up Python 3.11 | |
uses: actions/setup-python@v4 | |
id: setPy | |
with: | |
python-version: "3.11" | |
- name: put ~/.local/bin on $PATH | |
run: echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV | |
- name: install tools and dependencies | |
run: | | |
python3 -m pip install --upgrade setuptools==59.8.0 pip wheel | |
python3 -m pip install scikit-build | |
python3 -m pip install cryptography | |
python3 -m pip install lockfile | |
python3 -m pip install syncrypto | |
python3 -m pip install -r tvb_build/docker/requirements_group | |
pip3 install --user --no-build-isolation tvb-gdist | |
python3 -m pip install elasticsearch | |
python3 -m pip install nbformat nbconvert | |
pip3 install ipympl seaborn | |
pip3 install --upgrade pip ipython ipykernel | |
ipython kernel install --name "python3" --user | |
- name: setup tvb | |
shell: pwsh | |
run: | | |
cd tvb_build | |
cmd /k "install_full_tvb.bat" | |
- name: cache data | |
id: cache-data | |
uses: actions/cache@v3 | |
with: | |
path: tvb_data | |
key: tvbdata | |
- name: download data | |
if: steps.cache-data.outputs.cache-hit != 'true' | |
shell: pwsh | |
run: | | |
Invoke-WebRequest -OutFile C:\\TEMP\\tvb_data.zip -Uri "https://zenodo.org/record/10128131/files/tvb_data.zip?download=1" | |
Expand-Archive 'C:\\TEMP\\tvb_data.zip' C:\\tvb_data | |
del C:\\TEMP\\tvb_data.zip | |
cd C:\\tvb_data | |
python setup.py develop | |
- name: run notebooks | |
run: | | |
python ./tvb_build/notebook_runner.py ./tvb_documentation/demos |