Prepare for next release

CITATION.cff

@@ -1,18 +1,18 @@
-# -----------------------------------------------------------
-# CITATION file created with {cffr} R package, v0.5.0
+# --------------------------------------------
+# CITATION file created with {cffr} R package
 # See also: https://docs.ropensci.org/cffr/
-# -----------------------------------------------------------
+# --------------------------------------------
 
 cff-version: 1.2.0
 message: 'To cite package "khroma" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'khroma: Colour Schemes for Scientific Data Visualization'
-version: 1.12.0
+version: 1.13.0
 doi: 10.5281/zenodo.1472077
 abstract: Color schemes ready for each type of data (qualitative, diverging or sequential),
   with colors that are distinct for all people, including color-blind readers. This
-  package provides an implementation of Paul Tol (2018) and Fabio Crameri (2018) <doi:10.5194/gmd-11-2541-2018>
+  package provides an implementation of Paul Tol (2018) and Fabio Crameri (2018) <https://doi.org/10.5194/gmd-11-2541-2018>
   color schemes for use with 'graphics' or 'ggplot2'. It provides tools to simulate
   color-blindness and to test how well the colors of any palette are identifiable.
   Several scientific thematic schemes (geologic timescale, land cover, FAO soils,
@@ -33,13 +33,12 @@ preferred-citation:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
-  location:
-    name: Pessac, France
-  notes: R package version 1.12.0
-  doi: 10.5281/zenodo.1472077
-  url: https://packages.tesselle.org/khroma/
   institution:
     name: Université Bordeaux Montaigne
+    address: Pessac, France
+  notes: R package version 1.13.0
+  doi: 10.5281/zenodo.1472077
+  url: https://packages.tesselle.org/khroma/
 repository: https://CRAN.R-project.org/package=khroma
 repository-code: https://github.com/tesselle/khroma
 url: https://packages.tesselle.org/khroma/
@@ -61,67 +60,61 @@ references:
   url: https://www.R-project.org/
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
   version: '>= 3.5.0'
 - type: software
   title: graphics
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: grDevices
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: grid
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: stats
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: utils
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
   - name: R Core Team
-  location:
-    name: Vienna, Austria
-  year: '2024'
   institution:
     name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
 - type: software
   title: ggplot2
   abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
@@ -156,18 +149,10 @@ references:
   - family-names: Dunnington
     given-names: Dewey
     orcid: https://orcid.org/0000-0002-9415-4582
-  year: '2024'
-- type: software
-  title: ggraph
-  abstract: 'ggraph: An Implementation of Grammar of Graphics for Graphs and Networks'
-  notes: Suggests
-  url: https://ggraph.data-imaginist.com
-  repository: https://CRAN.R-project.org/package=ggraph
-  authors:
-  - family-names: Pedersen
-    given-names: Thomas Lin
-    email: [email protected]
-    orcid: https://orcid.org/0000-0002-5147-4711
+  - family-names: Brand
+    given-names: Teun
+    name-particle: van den
+    orcid: https://orcid.org/0000-0002-9335-7468
   year: '2024'
 - type: software
   title: knitr
@@ -282,8 +267,9 @@ references:
   url: https://github.com/markvanderloo/tinytest
   repository: https://CRAN.R-project.org/package=tinytest
   authors:
-  - family-names: van der Loo
+  - family-names: Loo
     given-names: Mark
+    name-particle: van der
     email: [email protected]
     orcid: https://orcid.org/0000-0002-9807-4686
   year: '2024'
@@ -344,4 +330,5 @@ identifiers:
   value: 10.5281/zenodo.10470003
 - description: The Software Heritage identifier for version 1.4.0.
   type: swh
-  value: swh:1:dir:ac530bf9321ee33e982c1e3fa44c275e01ba3fb1
+  value: swh:1:snp:4eeb6407ecccc7391eddcf1c83dd8b0a20168592
+

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: khroma
 Title: Colour Schemes for Scientific Data Visualization
-Version: 1.12.0.9000
+Version: 1.13.0
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),

NEWS.md

@@ -1,4 +1,4 @@
-# khroma 1.12.0.9000
+# khroma 1.13.0
 ## New functions
 * Add `palette_color_picker()`, `palette_color_continuous()` and  `palette_color_discrete()` to map values to colors.
 * Add `palette_shape()` and `palette_line()` to map values to symbols.
@@ -17,7 +17,7 @@
 * Add Paul Tol `nightfall` and `incandescent` colour schemes.
 
 ## Bugfixes & changes
-*  Fix `discreterainbow` scheme (qualitative scheme instead of sequential).
+*  Fix `discreterainbow` scheme (*qualitative* scheme instead of *sequential*).
 
 # khroma 1.11.0
 ## Bugfixes & changes

R/khroma-package.R

@@ -2,7 +2,7 @@
 #'  \tabular{ll}{
 #'   **Package:** \tab khroma \cr
 #'   **Type:** \tab Package \cr
-#'   **Version:** \tab 1.12.0 \cr
+#'   **Version:** \tab 1.13.0 \cr
 #'   **License:** \tab GPL-3 \cr
 #'   **Zenodo:** \tab \doi{10.5281/zenodo.1472077} \cr
 #'  }

README.Rmd

@@ -21,7 +21,7 @@ Sys.setlocale("LC_MESSAGES", 'en_GB.UTF-8') # Force locale
 [![R-CMD-check](https://github.com/tesselle/khroma/workflows/R-CMD-check/badge.svg)](https://github.com/tesselle/khroma/actions)
 [![codecov](https://codecov.io/gh/tesselle/khroma/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tesselle/khroma)
 [![CodeFactor](https://www.codefactor.io/repository/github/tesselle/khroma/badge/main)](https://www.codefactor.io/repository/github/tesselle/khroma/overview/main)
-[![Dependencies](https://tinyverse.netlify.com/badge/khroma)](https://cran.r-project.org/package=khroma)
+[![Dependencies](https://tinyverse.netlify.app/badge/khroma)](https://cran.r-project.org/package=khroma)
 
 [![r-universe](https://tesselle.r-universe.dev/badges/khroma)](https://tesselle.r-universe.dev/khroma){.pkgdown-devel}
 [![CRAN Version](http://www.r-pkg.org/badges/version/khroma)](https://cran.r-project.org/package=khroma){.pkgdown-release}
@@ -53,8 +53,11 @@ For specific uses, several scientific thematic schemes (geologic timescale, land
 
 All these color schemes are implemented for use with base R **graphics** or [**ggplot2**](https://github.com/tidyverse/ggplot2) and [**ggraph**](https://github.com/thomasp85/ggraph).
 
-```{r citation, echo=FALSE, comment=''}
-utils::citation("khroma")
+---
+
+```{r citation, echo=FALSE, comment='', results='asis'}
+cite <- utils::citation("khroma")
+print(cite, bibtex = FALSE)
 ```
 
 ## Installation

README.md

@@ -8,7 +8,7 @@
 [![R-CMD-check](https://github.com/tesselle/khroma/workflows/R-CMD-check/badge.svg)](https://github.com/tesselle/khroma/actions)
 [![codecov](https://codecov.io/gh/tesselle/khroma/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tesselle/khroma)
 [![CodeFactor](https://www.codefactor.io/repository/github/tesselle/khroma/badge/main)](https://www.codefactor.io/repository/github/tesselle/khroma/overview/main)
-[![Dependencies](https://tinyverse.netlify.com/badge/khroma)](https://cran.r-project.org/package=khroma)
+[![Dependencies](https://tinyverse.netlify.app/badge/khroma)](https://cran.r-project.org/package=khroma)
 
 <a href="https://tesselle.r-universe.dev/khroma"
 class="pkgdown-devel"><img
@@ -70,28 +70,17 @@ All these color schemes are implemented for use with base R **graphics**
 or [**ggplot2**](https://github.com/tidyverse/ggplot2) and
 [**ggraph**](https://github.com/thomasp85/ggraph).
 
-    To cite khroma in publications use:
+------------------------------------------------------------------------
 
-      Frerebeau N (2024). _khroma: Colour Schemes for Scientific Data
-      Visualization_. Université Bordeaux Montaigne, Pessac, France.
-      doi:10.5281/zenodo.1472077 <https://doi.org/10.5281/zenodo.1472077>,
-      R package version 1.12.0, <https://packages.tesselle.org/khroma/>.
+To cite khroma in publications use:
 
-    A BibTeX entry for LaTeX users is
+Frerebeau N (2024). *khroma: Colour Schemes for Scientific Data
+Visualization*. Université Bordeaux Montaigne, Pessac, France.
+<doi:10.5281/zenodo.1472077> <https://doi.org/10.5281/zenodo.1472077>, R
+package version 1.13.0, <https://packages.tesselle.org/khroma/>.
 
-      @Manual{,
-        author = {Nicolas Frerebeau},
-        title = {{khroma: Colour Schemes for Scientific Data Visualization}},
-        year = {2024},
-        organization = {Université Bordeaux Montaigne},
-        address = {Pessac, France},
-        note = {R package version 1.12.0},
-        doi = {10.5281/zenodo.1472077},
-        url = {https://packages.tesselle.org/khroma/},
-      }
-
-    This package is a part of the tesselle project
-    <https://www.tesselle.org>.
+This package is a part of the tesselle project
+<https://www.tesselle.org>.
 
 ## Installation
 
@@ -191,21 +180,20 @@ info()
 
 ### Color palettes and scales
 
-`color()` returns a palette function that when called with a single
-integer argument returns a vector of colors.
+`color()` returns a function that when called with a single integer
+argument returns a vector of colors.
 
 ``` r
 ## Paul Tol's bright color scheme
 bright <- color("bright")
 bright(7)
-#>      blue       red     green    yellow      cyan    purple      grey 
-#> "#4477AA" "#EE6677" "#228833" "#CCBB44" "#66CCEE" "#AA3377" "#BBBBBB" 
+#> [1] "#4477AA" "#EE6677" "#228833" "#CCBB44" "#66CCEE" "#AA3377" "#BBBBBB"
 #> attr(,"missing")
 #> [1] NA
 ```
 
 ``` r
-## Show the color palette
+## Plot the color scheme
 plot_scheme(bright(7), colours = TRUE)
 ```
 
@@ -220,10 +208,11 @@ plot(
   x = mpg$displ,
   y = mpg$hwy,
   pch = 16,
-  col = color("bright")(7)[as.factor(mpg$class)],
+  col = palette_color_picker("bright")(mpg$class),
   xlab = "displ",
   ylab = "hwy",
-  panel.first = grid()
+  panel.first = grid(),
+  las = 1
 )
 ```
 
@@ -290,7 +279,8 @@ to this project, you agree to abide by its terms.
 
 ## References
 
-<div id="refs" class="references csl-bib-body hanging-indent">
+<div id="refs" class="references csl-bib-body hanging-indent"
+entry-spacing="0">
 
 <div id="ref-crameri2018" class="csl-entry">
 

codecov.yml

@@ -2,6 +2,7 @@ comment: false
 
 ignore:
   - "R/khroma-deprecated.R"
+  - "R/khroma-defunct.R"
   - "R/zzz.R"
 
 coverage:

codemeta.json

@@ -8,13 +8,13 @@
   "codeRepository": "https://github.com/tesselle/khroma",
   "issueTracker": "https://github.com/tesselle/khroma/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "1.12.0",
+  "version": "1.13.0",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 4.3.2 (2023-10-31)",
+  "runtimePlatform": "R version 4.4.1 (2024-06-14)",
   "provider": {
     "@id": "https://cran.r-project.org",
     "@type": "Organization",
@@ -228,7 +228,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "1385.792KB",
+  "fileSize": "1412.117KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -243,7 +243,7 @@
       "name": "{khroma: Colour Schemes for Scientific Data Visualization}",
       "identifier": "10.5281/zenodo.1472077",
       "url": "https://packages.tesselle.org/khroma/",
-      "description": "R package version 1.12.0",
+      "description": "R package version 1.13.0",
       "@id": "https://doi.org/10.5281/zenodo.1472077",
       "sameAs": "https://doi.org/10.5281/zenodo.1472077"
     }

cran-comments.md

@@ -1,5 +1,5 @@
 ## Test environments
-* Local R installation: R 4.3.2
+* Local R installation: R 4.4.1
 * Ubuntu (on GitHub Actions): R devel, release, oldrel
 * Windows (on GitHub Actions and win-builder): R devel, release, oldrel
 * MacOS (on GitHub Actions): R release