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Plasma mutliple outputs #342

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wants to merge 82 commits into from
Closed

Plasma mutliple outputs #342

wants to merge 82 commits into from

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wkerzendorf
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A reimagining of #341.

wkerzendorf added 30 commits June 26, 2015 16:38
@wkerzendorf
adding a new plasma structure
851c3a8
@wkerzendorf
first attempt to do the networkx plasma
f9fb773
@wkerzendorf
first tests with the new plasma system
f7e2184
@wkerzendorf
still in the phase of adding networkx to plasma
6fa5927
@wkerzendorf
added getattr stuff
5fa3deb
@wkerzendorf
added inpout and getattr
3850785
@wkerzendorf
added update skeleton
d1fd14c
@wkerzendorf
added test with atomic data dependency
724de4d
@wkerzendorf
working tests
f980254
@wkerzendorf
further improvements to the new plasma class.
47d4704
@wkerzendorf
generating plasma overview latex graph
0862d98
@wkerzendorf
added documentation, doesn't quite work yet
e813f3f
@wkerzendorf
begin of restructuring atomic api
a9227e9
@wkerzendorf
added the atomic data stuff
a93400f
@wkerzendorf
adding Saha ionization to the new plasma
c8c9462
@wkerzendorf
transferred most of the plasma functions into the new structure
cad32eb
@wkerzendorf
restructuring the documentation system
de41254
@wkerzendorf
further restructuring to autodetect the inputs from the calculate cal…
6bf3b59 
…l signature
@wkerzendorf
figuring out ionization calculation
4690ad6
@wkerzendorf
calculating lte up to level populations
22436b5
@wkerzendorf
working simple lte plasma - off to write some tests
2fe1368
@wkerzendorf
finished tests for general_properties
fbeebe2
@wkerzendorf
continue to write the tests
74d003d
@wkerzendorf
added test_partition_function script
5997700
@wkerzendorf
massive change of structure
d6fed64
@wkerzendorf
restructure to properties complete
4c7dd1f
@wkerzendorf
fixed the pep8
59b2dc5
@wkerzendorf
fixed most of the documentation
f929320
@wkerzendorf
added a stump for BetaSobolev
7c56236
@wkerzendorf
removed transition probabilities module for now
4d475c7
Aoife Boyle and others added 29 commits June 26, 2015 16:39
@wkerzendorf
Added LTE to possible radiative rates types in the config.
d2c22b0
@wkerzendorf
Few tweaks.
36c37af
@wkerzendorf
Few tweaks.
3f88a31
@wkerzendorf
Fixing LegacyPlasma montecarlo issue.
45184e0
@wkerzendorf
Added montecarlo capabilities.
2f2747d
@wkerzendorf
Changed electron density property so that it is calculated from the S…
dfd084f 
…aha equation rather than by summing over ions.
@wkerzendorf
Code now converging on correct solution for scatter, downbranch, macr…
385203d 
…oatom with LTE. Some small issues to be addressed.
@wkerzendorf
Skipping spectrum test.
ccdff54
@wkerzendorf
Naming convention, fixed spectrum test, new tests.
e9994fd
@wkerzendorf
Naming convention, fixed spectrum test, new tests.
f6b8c41
@wkerzendorf
Added dilute-lte and nebular ionisation to the new plasma.
ec8fcda
@wkerzendorf
Added dilute-lte and nebular ionisation to the new plasma.
d994181
@wkerzendorf
Added electron temperature property.
3a811b1
@wkerzendorf
Added electron temperature property.
016a2fd
@wkerzendorf
Added delta treatment (some minor issues to be resolved).
6f5f27a
@wkerzendorf
Made input of delta_treatment adjustable using config. file.
4a01ca8
@wkerzendorf
Changed how departure_coefficient and chi_0_species are set.
c3298a6
@wkerzendorf
Made ZetaData a BaseAtomicPlasmaProperty to allow filtering.
40c2c79
@wkerzendorf
Added warnings for missing ions and fix for missing zetas.
31487e6
@wkerzendorf
Made ion_populations BaseAtomicPlasmaProperty.
fb57908
@wkerzendorf
Updated module tests.
e7aeff5
@wkerzendorf
Added raise error for missing zeta data.
7fb9887
@wkerzendorf
finished rebase
3fc862f
Initial steps.
64b03c3
testing
6de860b
@wkerzendorf
updated the plasma with the new outputs
834a71b
@wkerzendorf
WIP for restructuring the plasma to work with multiple outputs
f695c05
@wkerzendorf
in the process of making the multiple outputs into the code
33ec741
@wkerzendorf
seems to work now
64bdf7a
@wkerzendorf wkerzendorf closed this Jul 1, 2015
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@wkerzendorf