Restructure excel_ui.run() to process Excel files lacking Beads or Samples sheets. #339
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Testing
I created the following variants of
examples/experiment.xlsx
:experiment_nobeads.xlsx
(Units changed from MEF to RFI)experiment_nosamples.xlsx
experiment_nobeads_nosamples.xlsx
and ran the Excel UI (
>python -m FlowCal.excel_ui -i experiment*.xlsx -v -p
), and the output files (XLSX file and plots) were created as expected in bothPython 3.8 + Anaconda 2020.02
andPython 2.7 + Anaconda 5.2.0
.Running the Excel UI with
develop
(3affd34) threw errors related to the absence of the Excel sheets.