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@sys-bio

UW Sauro Lab

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  1. tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 112 37

  2. roadrunner Public

    Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 44 25

Repositories

Showing 10 of 107 repositories
  • BiomodelsCache Public

    A biomodels cache for faster lookup.

    Python 0 CC0-1.0 1 0 0 Updated Mar 1, 2025
  • BiomodelsStore Public Forked from konankisa/BiomodelsStore
    JavaScript 0 1 0 0 Updated Mar 1, 2025
  • roadrunner Public Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 44 33 80 (1 issue needs help) 2 Updated Mar 1, 2025
  • makesbml Public

    Simple site to convert antimony to sbml

    JavaScript 1 Apache-2.0 1 1 1 Updated Feb 28, 2025
  • SBMLNetwork Public Forked from adelhpour/SBMLNetwork

    SBMLNetwork is a library designed to enable software developers and systems biologists to interact with the graphical representation of SBML (Systems Biology Markup Language) models.

    C++ 0 MIT 1 12 1 Updated Feb 28, 2025
  • AntimonyEditor Public

    Antimony Web Editor: A Web Editor for the Antimony Modeling Language

    TypeScript 0 MIT 1 17 2 Updated Feb 26, 2025
  • tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 112 Apache-2.0 37 123 4 Updated Feb 22, 2025
  • ratesb_python Public

    Analysis of rate laws in reaction networks.

    Python 1 MIT 1 9 0 Updated Feb 18, 2025
  • antimony Public
    C++ 18 BSD-3-Clause 4 26 1 Updated Feb 12, 2025
  • PaperSummaryDataset Public

    A workflow for generating summaries of research papers on biological models using generative AI.

    Python 0 MIT 0 0 2 Updated Jan 27, 2025
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