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Merge pull request #59 from symbiotic-engineering/fix-zenodo

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GitHub Actions / JUnit Test Report failed Oct 27, 2024 in 0s

36 tests run, 24 passed, 0 skipped, 12 failed.

Annotations

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=6,which_tabs=0_5)

Error occurred in test/allFiguresRun(which_figs=6,which_tabs=0_5) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=6,which_tabs=0_5) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in pareto_search (line 8)
        [X_opt,objs_opt,~,probs] = gradient_optim(x0,p,b);
    
    Error in all_figures (line 37)
        pareto_search();
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=7,which_tabs=0_6)

Error occurred in test/allFiguresRun(which_figs=7,which_tabs=0_6) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=7,which_tabs=0_6) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in pareto_search (line 8)
        [X_opt,objs_opt,~,probs] = gradient_optim(x0,p,b);
    
    Error in all_figures (line 37)
        pareto_search();
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in dev/MEEM/test_MEEM.m

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test_MEEM.run

Error occurred in test_MEEM/run and it did not run to completion.
    ---------
Raw output
Error occurred in test_MEEM/run and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Unrecognized function or variable 'heaving_IC'.
    
    Error in test_MEEM (line 51)
    [mu_nondim, lambda_nondim] = run_MEEM(heaving_IC, heaving_OC, auto_BCs, N_num, M_num, K_num, ...

Check failure on line 1 in dev/MEEM/test_MEEM.m

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test_MEEM.plotHydroCoeffsVsWavenumber

Error occurred in test_MEEM/plotHydroCoeffsVsWavenumber and it did not run to completion.
    ---------
Raw output
Error occurred in test_MEEM/plotHydroCoeffsVsWavenumber and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Unrecognized function or variable 'm0_nums'.
    
    Error in test_MEEM (line 58)
    plot(m0_nums,mu_nondim, m0_nums,lambda_nondim)

Check failure on line 1 in tests/test.m

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test.validateNominalHydroCoeffs

Error occurred in test/validateNominalHydroCoeffs and it did not run to completion.
    ---------
Raw output
Error occurred in test/validateNominalHydroCoeffs and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Not enough input arguments.
    
    Error in get_hydro_coeffs_MEEM (line 10)
    N_num = harmonics;
    
    Error in hydro_coeff_err (line 31)
        [A_MDOcean,B_MDOcean,gamma_MDOcean] = get_hydro_coeffs_MEEM(a2, k, d2, a1, d1, h); 
    
    Error in test/validateNominalHydroCoeffs (line 68)
                mean_err = hydro_coeff_err(false);

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=0_4,which_tabs=5)

Error occurred in test/allFiguresRun(which_figs=0_4,which_tabs=5) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=0_4,which_tabs=5) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in compare (line 7)
    Xs_opt = gradient_optim(x0_input,p,b);
    
    Error in all_figures (line 49)
        compare()
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=0_5,which_tabs=6)

Error occurred in test/allFiguresRun(which_figs=0_5,which_tabs=6) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=0_5,which_tabs=6) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in location_sensitivity (line 24)
        [X_opts(:,i), obj_opts(i), flags(i)]  = gradient_optim(X,p,b,which_obj);
    
    Error in all_figures (line 80)
        location_sensitivity()
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=8,which_tabs=0_7)

Error occurred in test/allFiguresRun(which_figs=8,which_tabs=0_7) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=8,which_tabs=0_7) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in param_sweep (line 29)
    x0_vec = gradient_optim(x0,p,b);
    
    Error in all_figures (line 43)
        param_sweep()
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=9,which_tabs=0_8)

Error occurred in test/allFiguresRun(which_figs=9,which_tabs=0_8) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=9,which_tabs=0_8) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in compare (line 7)
    Xs_opt = gradient_optim(x0_input,p,b);
    
    Error in all_figures (line 49)
        compare()
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in tests/test.m

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test.allFiguresRun(which_figs=10,which_tabs=0_9)

Error occurred in test/allFiguresRun(which_figs=10,which_tabs=0_9) and it did not run to completion.
    ---------
Raw output
Error occurred in test/allFiguresRun(which_figs=10,which_tabs=0_9) and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:UndefinedFunction'
    --------------
    Error Details:
    --------------
    Undefined function 'generatedFunction_simulation1_withReuse' for input arguments of type 'struct'.
    
    Error in generatedObjectiveLCOE (line 53)
    [arg1,~,~,~] = generatedFunction_simulation1_withReuse(arg2(:)', extraParams{1});
    
    Error in optim.internal.problemdef.compile.snapExtraParams
    
    Error in optimfcnchk/checkfun (line 244)
                f = userfcn(x,varargin{:});
    
    Error in objfunEvaluator (line 5)
    fval = feval(Objfun, x, self.FunArgs.AdditionalParameters{:});
    
    Error in OptimFunctions/objectiveFirstEval (line 645)
                    [fval, grad, hess] = self.ObjectiveFunAndGrad(self,self.FunFcn{3},...
    
    Error in fmincon (line 501)
    [initVals.f,initVals.g,HESSIAN,funObj] = funObj.objectiveFirstEval(X);
    
    Error in run_solver (line 17)
            [X_opt,obj_opt,flag,output,lambda,grad,hess] = fmincon(problem);
    
    Error in gradient_optim>optimize_both_objectives (line 89)
            [X_opt_raw,obj_opt,flag,output,lambda,grad,hess,problem] = run_solver(prob, obj_names{which_obj}, x0, opts);
    
    Error in gradient_optim (line 43)
        [Xs_opt, objs_opt, flags, probs] = optimize_both_objectives(X,p,b,x0_input,opts,ploton,which_objs);
    
    Error in compare (line 7)
    Xs_opt = gradient_optim(x0_input,p,b);
    
    Error in all_figures (line 49)
        compare()
    
    Error in test/allFiguresRun (line 51)
                all_figures(which_figs,which_tabs);
    
    Caused by:
        Failure in initial objective function evaluation. FMINCON cannot continue.

Check failure on line 1 in tests/test.m

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test.validateNominal(field=FOS_b,rel_tol=0.1_7)

Verification failed in test/validateNominal(field=FOS_b,rel_tol=0.1_7).
    ---------------------
Raw output
Verification failed in test/validateNominal(field=FOS_b,rel_tol=0.1_7).
    ---------------------
    Framework Diagnostic:
    ---------------------
    verifyEqual failed.
    --> The numeric values are not equal using "isequaln".
    --> The error was not within relative tolerance.
    --> Failure table:
                Actual         Expected         Error          RelativeError     RelativeTolerance
            _______________    ________    _______________    _______________    _________________
                                                                                                  
            63.793005293448       3        60.793005293448    20.264335097816           0.1       
    
    Actual Value:
      63.793005293447997
    Expected Value:
         3
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/MDOcean/MDOcean/tests/test.m (test.validateNominal) at 57

Check failure on line 1 in tests/test.m

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test.validateNominal(field=c_v,rel_tol=0.1_8)

Verification failed in test/validateNominal(field=c_v,rel_tol=0.1_8).
    ---------------------
Raw output
Verification failed in test/validateNominal(field=c_v,rel_tol=0.1_8).
    ---------------------
    Framework Diagnostic:
    ---------------------
    verifyEqual failed.
    --> The numeric values are not equal using "isequaln".
    --> The error was not within relative tolerance.
    --> Failure table:
                 Actual             Expected             Error            RelativeError      RelativeTolerance
            ________________    ________________    ________________    _________________    _________________
                                                                                                              
            90.0267396117735    71.0526622304404    18.9740773813331    0.267042455352281           0.1       
    
    Actual Value:
      90.026739611773536
    Expected Value:
      71.052662230440447
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/MDOcean/MDOcean/tests/test.m (test.validateNominal) at 57