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  1. HarmonicNet HarmonicNet Public

    Spherical Harmonics for Shape-Constrained 3D Cell Segmentation

    Python 1

  2. CellCycleGAN CellCycleGAN Public

    Data synthesis framework for 2D microscopy images using statistical shape models and GANs.

    MATLAB 4

  3. LiveCellMiner LiveCellMiner Public

    Extension to the SciXMiner MATLAB toolbox used for quantitative analysis of chromatin decondensation

    MATLAB 3

  4. ColonyCounter ColonyCounter Public

    MATLAB GUI for Semi-Automatic Quantification of Bacteria Colonies

    MATLAB 1

  5. CellShapeAnalysis CellShapeAnalysis Public

    Collection of methods used for segmentation and quantitative analysis of gastrulation in Drosophila embryos that were recorded using light-sheet microscopy.

    MATLAB 3 1

  6. FilopodiaSegmentation FilopodiaSegmentation Public

    MATLAB Tools for Semi-Automatic Segmentation of Filopodia in 2D and 3D Microscopy Images

    MATLAB