sbalci
Follow
Histopathology Image Analysis
A whole-slide image reader for TensorFlow
OMERO.web app to support an image viewer based on OpenSeadragon
Interoperable web-based DICOM slide microscopy viewer and annotation tool
A tool for rapidly labeling objects using deep learning feature embedding
Whole Slide Image Segmentation
Displays list of virtual microscope slides that can be displayed by the Viewer
Viewer for multifocal-plane virtual microscope
Image Processing and CV on Whole Slide Images
Implementation of state of the art algorithms for uneven illomination correction in whole slide imaging
This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.
A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained samples.
Supplementary information associated with Besson et al. (2019) ECDP 2019
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…
Convert GeoJSON of polygons to pyramical TIF images
Python-based pipeline for tiles generation and pre-processing from digitized histopathological images.
Implementation of HistoTransfer published in IEEE-BHI 2021.
A pyqt5 GUI for CBIR in whole-slide images with Openslide
Delete the label image to deidentify a whole-slide image (WSI) with an optional GUI
Metadata files for the idr0042 submission
Elm library providing encoder/decoder for automated slide analysis platform XML format (https://github.com/computationalpathologygroup/ASAP).
A pyqt5 widget for viewing collection of whole-slide images with Openslide
Deep Learning for medical imaging kaggle challenge for the MVA master 2021-2022. Classification of ISUP grades from Whole Slide Images.
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
A pipeline to preprocess whole-slide images (WSI) towards deep learning
🧠 A deep learning algorithm based on convolutional neural networks to detect glandular cells in digitalized biopsies of the prostate. Performed as bachelor thesis for the degree in computer enginee…
[ESWA 2023] Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis
GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -- CMPB 2023