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@histopathology

Histopathology Research

Collection of Repositories related to Histopathology and Image Analysis
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  1. Deeplearning-digital-pathology Deeplearning-digital-pathology Public

    Forked from zhaoxuanma/Deeplearning-digital-pathology

    Full package for applying deep learning to virtual slides.

    Python 1

  2. FQPath FQPath Public

    Forked from mahdihosseini/FQPath

    No-Reference Focus Quality Assessment of Digital Pathology Images [IEEE TMI 2019]

    MATLAB 1

  3. qupath-extension-sam qupath-extension-sam Public

    Forked from ksugar/qupath-extension-sam

    QuPath extension for Segment Anything Model (SAM)

    Java 1

  4. OpenAL OpenAL Public

    Forked from miccaiif/OpenAL

    Official PyTorch Code of our MICCAI2023 paper OpenAL

    1

  5. WSI_histology WSI_histology Public

    Forked from tovaroe/WSI_histology

    MATLAB functionality for working with whole slide images of histological slide scans

    MATLAB 1

  6. wsinfer wsinfer Public

    Forked from SBU-BMI/wsinfer

    🔥🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    Python 1

Repositories

Showing 10 of 376 repositories
  • python-zero-to-hero-beginners-course Public Forked from ChasNelson1990/python-zero-to-hero-beginners-course

    Materials for a Python Beginner's Course. First given at the Royal Society of Biology. Designed and delivered by Chas Nelson and Mikolaj Kundegorski.

    histopathology/python-zero-to-hero-beginners-course’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 20 0 0 Updated Jan 26, 2025
  • QuickAnnotator Public Forked from choosehappy/QuickAnnotator

    An open-source digital pathology based rapid image annotation tool

    histopathology/QuickAnnotator’s past year of commit activity
    JavaScript 0 BSD-3-Clause-Clear 27 0 0 Updated Jan 26, 2025
  • HistoQC Public Forked from choosehappy/HistoQC

    HistoQC is an open-source quality control tool for digital pathology slides

    histopathology/HistoQC’s past year of commit activity
    JavaScript 0 BSD-3-Clause-Clear 108 0 0 Updated Jan 26, 2025
  • BioImageAnalysisNotebooks Public Forked from haesleinhuepf/BioImageAnalysisNotebooks
    histopathology/BioImageAnalysisNotebooks’s past year of commit activity
    Cool 0 BSD-3-Clause 38 0 0 Updated Jan 26, 2025
  • tiatoolbox Public Forked from TissueImageAnalytics/tiatoolbox

    Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

    histopathology/tiatoolbox’s past year of commit activity
    Python 0 83 0 0 Updated Jan 26, 2025
  • dlup Public Forked from NKI-AI/dlup

    Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

    histopathology/dlup’s past year of commit activity
    Python 0 Apache-2.0 7 0 0 Updated Jan 26, 2025
  • grandqc Public Forked from cpath-ukk/grandqc

    GrandQC tool for tissue detection and quality control in pathology

    histopathology/grandqc’s past year of commit activity
    Python 0 6 0 0 Updated Jan 26, 2025
  • dpat_imageanalysisapi_sdk Public Forked from sectra-medical/dpat_imageanalysisapi_sdk

    SDK for Sectra's ImageAnalysis API for Digital Pathology

    histopathology/dpat_imageanalysisapi_sdk’s past year of commit activity
    Python 0 BSD-3-Clause-Clear 3 0 0 Updated Jan 14, 2025
  • TITAN Public Forked from mahmoodlab/TITAN

    Multimodal Whole Slide Foundation Model for Pathology

    histopathology/TITAN’s past year of commit activity
    Jupyter Notebook 0 17 0 0 Updated Dec 3, 2024
  • BiomedParse Public Forked from microsoft/BiomedParse

    BiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities

    histopathology/BiomedParse’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 36 0 0 Updated Nov 27, 2024
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