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SCT commit: 399c0a679264945e6c41fd7e80fd4d39320c21ff SCT commit message: Merge pull request #1052 from neuropoly/jca_use_osf Download links now point to the OSF website https://osf.io Former-commit-id: 379aeab56205d232c3639e9f2a67fe65cb2988c5 [formerly 0a8fcc8bef5ea49bb1dc499fb9f048b2ea126c01] Former-commit-id: 5767320a9eb92dbe0c3b6b2338d10137404f31d3 Former-commit-id: 903b35135200cb7eda50df54e49fb48e192451a5
spinalcordtoolbox · Dec 7, 2016 · d31aeff · d31aeff
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,5 +1,12 @@
 #PAM50 Template
 
+##2016-11-28 (JCA)
+- added spinal levels using $SCT_DIR/dev/spinal_level/sct_extract_spinal_levels.py
+- Removed __MACOSX in archive using
+~~~
+zip -r 20161121_PAM50.zip PAM50/
+~~~
+
 ##2016-11-21 (JCA)
 - Added #Keyword= entries for cleaner code
 

diff --git a/spinal_levels/info_label.txt b/spinal_levels/info_label.txt
@@ -0,0 +1,23 @@
+# Spinal levels labels - generated on 2016-11-28
+# Keyword=IndivLabels (Please DO NOT change this line)
+# ID, name, file
+0, Spinal level C1, spinal_level_01.nii.gz
+1, Spinal level C2, spinal_level_02.nii.gz
+2, Spinal level C3, spinal_level_03.nii.gz
+3, Spinal level C4, spinal_level_04.nii.gz
+4, Spinal level C5, spinal_level_05.nii.gz
+5, Spinal level C6, spinal_level_06.nii.gz
+6, Spinal level C7, spinal_level_07.nii.gz
+7, Spinal level C8, spinal_level_08.nii.gz
+8, Spinal level T1, spinal_level_09.nii.gz
+9, Spinal level T2, spinal_level_10.nii.gz
+10, Spinal level T3, spinal_level_11.nii.gz
+11, Spinal level T4, spinal_level_12.nii.gz
+12, Spinal level T5, spinal_level_13.nii.gz
+13, Spinal level T6, spinal_level_14.nii.gz
+14, Spinal level T7, spinal_level_15.nii.gz
+15, Spinal level T8, spinal_level_16.nii.gz
+16, Spinal level T9, spinal_level_17.nii.gz
+17, Spinal level T10, spinal_level_18.nii.gz
+18, Spinal level T11, spinal_level_19.nii.gz
+19, Spinal level T12, spinal_level_20.nii.gz
diff --git a/spinal_levels/spinal_level_01.nii.gz b/spinal_levels/spinal_level_01.nii.gz
diff --git a/spinal_levels/spinal_level_02.nii.gz b/spinal_levels/spinal_level_02.nii.gz
diff --git a/spinal_levels/spinal_level_03.nii.gz b/spinal_levels/spinal_level_03.nii.gz
diff --git a/spinal_levels/spinal_level_04.nii.gz b/spinal_levels/spinal_level_04.nii.gz
diff --git a/spinal_levels/spinal_level_05.nii.gz b/spinal_levels/spinal_level_05.nii.gz
diff --git a/spinal_levels/spinal_level_06.nii.gz b/spinal_levels/spinal_level_06.nii.gz
diff --git a/spinal_levels/spinal_level_07.nii.gz b/spinal_levels/spinal_level_07.nii.gz
diff --git a/spinal_levels/spinal_level_08.nii.gz b/spinal_levels/spinal_level_08.nii.gz
diff --git a/spinal_levels/spinal_level_09.nii.gz b/spinal_levels/spinal_level_09.nii.gz
diff --git a/spinal_levels/spinal_level_10.nii.gz b/spinal_levels/spinal_level_10.nii.gz
diff --git a/spinal_levels/spinal_level_11.nii.gz b/spinal_levels/spinal_level_11.nii.gz
diff --git a/spinal_levels/spinal_level_12.nii.gz b/spinal_levels/spinal_level_12.nii.gz
diff --git a/spinal_levels/spinal_level_13.nii.gz b/spinal_levels/spinal_level_13.nii.gz
diff --git a/spinal_levels/spinal_level_14.nii.gz b/spinal_levels/spinal_level_14.nii.gz
diff --git a/spinal_levels/spinal_level_15.nii.gz b/spinal_levels/spinal_level_15.nii.gz
diff --git a/spinal_levels/spinal_level_16.nii.gz b/spinal_levels/spinal_level_16.nii.gz
diff --git a/spinal_levels/spinal_level_17.nii.gz b/spinal_levels/spinal_level_17.nii.gz
diff --git a/spinal_levels/spinal_level_18.nii.gz b/spinal_levels/spinal_level_18.nii.gz
diff --git a/spinal_levels/spinal_level_19.nii.gz b/spinal_levels/spinal_level_19.nii.gz
diff --git a/spinal_levels/spinal_level_20.nii.gz b/spinal_levels/spinal_level_20.nii.gz
diff --git a/template/info_label.txt b/template/info_label.txt
@@ -3,7 +3,7 @@
 # ID, name, file
 0, T1-weighted template, PAM50_t1.nii.gz
 1, T2-weighted template, PAM50_t2.nii.gz
-2, T2*-weighted template, PAM50_t2s.nii.gz
+2, T2S-weighted template, PAM50_t2s.nii.gz
 3, spinal cord, PAM50_cord.nii.gz
 4, white matter, PAM50_wm.nii.gz
 5, gray matter, PAM50_gm.nii.gz