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SCT commit: 6cae82c8e7859f79ff3c77d33a73c2dc8b39ea0a SCT commit message: Merge pull request #2513 from neuropoly/cg/reg_spinal_level Spinal-level-based registration to the PAM50 Former-commit-id: 9ad03c5e773a6963fb4c523740192d2e1f20f159
spinalcordtoolbox · Oct 29, 2019 · 59cb6fb · 59cb6fb
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,5 +1,9 @@
 #PAM50 Template
 
+##2019-10-29 (CG)
+- Added template/PAM50_label_spinal_levels.nii.gz
+- Clarify label names in template/info_label.txt
+
 ##2018-12-11 (BDL)
 - Aligned the template with the ICBM152 (more info here: https://github.com/neuropoly/spinalcordtoolbox/issues/2085)
 - Cropped the template just above C1 vertebral label

diff --git a/template/PAM50_label_spinal_levels.nii.gz b/template/PAM50_label_spinal_levels.nii.gz
diff --git a/template/info_label.txt b/template/info_label.txt
@@ -4,15 +4,16 @@
 0, T1-weighted template, PAM50_t1.nii.gz
 1, T2-weighted template, PAM50_t2.nii.gz
 2, T2S-weighted template, PAM50_t2s.nii.gz
-3, spinal cord, PAM50_cord.nii.gz
-4, white matter, PAM50_wm.nii.gz
-5, gray matter, PAM50_gm.nii.gz
-6, cerebrospinal fluid, PAM50_csf.nii.gz
-7, vertebral labeling, PAM50_levels.nii.gz
-8, continuous vertebral labeling, PAM50_levels_continuous.nii.gz
-9, vertebral body labeling, PAM50_label_body.nii.gz
-10, intervertebral discs labeling, PAM50_label_disc.nii.gz
-11, intervertebral discs labeling posterior, PAM50_label_discPosterior.nii.gz
-12, spine, PAM50_spine.nii.gz
-13, centerline, PAM50_centerline.nii.gz
+3, spinal cord mask (binary), PAM50_cord.nii.gz
+4, white matter mask (probabilistic), PAM50_wm.nii.gz
+5, gray matter mask (probabilistic), PAM50_gm.nii.gz
+6, cerebrospinal fluid mask (binary), PAM50_csf.nii.gz
+7, spinal cord mask with discrete vertebral levels, PAM50_levels.nii.gz
+8, spinal cord mask with continuous vertebral levels, PAM50_levels_continuous.nii.gz
+9, point-wise vertebral body labels, PAM50_label_body.nii.gz
+10, point-wise intervertebral disc labels, PAM50_label_disc.nii.gz
+11, point-wise posterior intervertebral disc labels, PAM50_label_discPosterior.nii.gz
+12, spine mask (binary), PAM50_spine.nii.gz
+13, spinal cord centerline, PAM50_centerline.nii.gz
+14, point-wise spinal level labels, PAM50_label_spinal_levels.nii.gz