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spholmes committed Jun 2, 2016
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Expand Up @@ -11,12 +11,12 @@ knit("PartIIphyloseq.Rnw")

The three Rnw files can be executed independently.

PartIdada.rnw is the read/bioinformatics preprocessing and is fairly time-consuming,
`PartIdada.rnw` is the read/bioinformatics preprocessing and is fairly time-consuming,
(it can take 3-6 hours on modern laptops).

PartIIphyloseq.rnw performs a few analyses with phyloseq and is quite fast.
`PartIIphyloseq.rnw` performs a few analyses with phyloseq and is quite fast.

PartIIIanalysis.rnw performs all the statistical analyses and the machine learning components can take about 10
`PartIIIanalysis.rnw` performs all the statistical analyses and the machine learning components can take about 10
minutes.


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