Revert "Fix coords assignment in CombineAdjustFeatures.run (#1965)"

This reverts commit 89baf83.
spacetx · Oct 20, 2021 · 16c7d47 · 16c7d47
1 parent 89baf83
commit 16c7d47
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Showing 2 changed files with 3 additions and 6 deletions.
diff --git a/starfish/core/intensity_table/intensity_table.py b/starfish/core/intensity_table/intensity_table.py
@@ -33,7 +33,7 @@ class IntensityTable(xr.DataArray):
     An IntensityTable records the numeric intensity of a set of features in each
     :code:`(round, channel)` tile in which the feature is identified.
     The :py:class:`IntensityTable` has shape
-    :code:`(n_feature, n_round, n_channel)`.
+    :code:`(n_feature, n_channel, n_round)`.
 
     Some :py:class:`SpotFinder` methods identify a position and search for
     Gaussian blobs in a small radius, only recording intensities if they are

diff --git a/starfish/core/spots/DetectPixels/combine_adjacent_features.py b/starfish/core/spots/DetectPixels/combine_adjacent_features.py
@@ -422,13 +422,10 @@ def run(
         # create new indexes for the output IntensityTable
         channel_index = mean_pixel_traces.indexes[Axes.CH]
         round_index = mean_pixel_traces.indexes[Axes.ROUND]
-        coords = IntensityTable._build_xarray_coords(
-            spot_attributes=spot_attributes,
-            round_values=round_index,
-            channel_values=channel_index)
+        coords = IntensityTable._build_xarray_coords(spot_attributes, channel_index, round_index)
 
         # create the output IntensityTable
-        dims = (Features.AXIS, Axes.ROUND.value, Axes.CH.value)
+        dims = (Features.AXIS, Axes.CH.value, Axes.ROUND.value)
         intensity_table = DecodedIntensityTable(
             data=mean_pixel_traces, coords=coords, dims=dims
         )