move build configuration from setup.py to pyproject.toml

.github/workflows/ci.yml

@@ -16,6 +16,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
+        with:
+          python-version: "3.x"
       - run: pip install bandit
       - run: bandit ./jwql/ -c .bandit
 
@@ -43,7 +45,7 @@ jobs:
           cache-env: true
           cache-downloads: true
 
-      - run: pip install -e .
+      - run: pip install -e .[test]
 
       - run: conda env export
 

MANIFEST.in

@@ -4,7 +4,7 @@ include LICENSE
 include CHANGES.rst
 include environment_python_3_7.yml
 include environment_python_3_8.yml
-include setup.py
+include pyproject.toml
 include requirements.txt
 include rtd_requirements.txt
 include jwql/example_config.json

README.md

@@ -49,7 +49,7 @@ It is highly suggested that contributors have a working installation of `anacond
 - [Miniconda](https://conda.io/miniconda.html)
 - [Anaconda](https://www.continuum.io/downloads)
 
-Requirements for contributing to the `jwql` package will be included in the `jwql` `conda` environment, which is included in our installation instructions below. Further package requirements will be provided for `jwql` by a `setup.py` script included in the repository.
+Requirements for contributing to the `jwql` package will be included in the `jwql` `conda` environment, which is included in our installation instructions below. Further package requirements will be provided for `jwql` by a `pyproject.toml` file included in the repository.
 
 ### Clone the `jwql` repo
 

jwql/utils/logging_functions.py

@@ -65,6 +65,11 @@ def my_main_function():
 import time
 import traceback
 
+if sys.version_info < (3, 11):
+    import tomli as tomllib
+else:
+    import tomllib
+
 from functools import wraps
 
 from jwql.utils.permissions import set_permissions
@@ -218,15 +223,10 @@ def wrapped(*args, **kwargs):
         logging.info('Running as PID {}'.format(os.getpid()))
 
         # Read in setup.py file to build list of required modules
-        with open(get_config()['setup_file']) as f:
-            data = f.readlines()
-
-        for i, line in enumerate(data):
-            if 'REQUIRES = [' in line:
-                begin = i + 1
-            elif 'setup(' in line:
-                end = i - 2
-        required_modules = data[begin:end]
+        with open("pyproject.toml", "rb") as f:
+            data = tomllib.load(f)
+
+        required_modules = data['project']['dependencies']
 
         # Clean up the module list
         module_list = [item.strip().replace("'", "").replace(",", "").split("=")[0].split(">")[0].split("<")[0] for item in required_modules]

pyproject.toml

@@ -1,6 +1,74 @@
-# pyproject.toml
+[project]
+name = "jwql"
+description = "The James Webb Space Telescope Quicklook Project"
+readme = "README.md"
+authors = [
+  { name = "Matthew Bourque" },
+  { name = "Lauren Chambers" },
+  { name = "Misty Cracraft" },
+  { name = "Mike Engesser" },
+  { name = "Mees Fix" },
+  { name = "Joe Filippazzo" },
+  { name = "Bryan Hilbert" },
+]
+keywords = ["astronomy", "python"]
+classifiers = ["Programming Language :: Python"]
+dependencies = [
+  "asdf",
+  "astropy",
+  "astroquery",
+  "bokeh<3",
+  "crds",
+  "cryptography",
+  "django",
+  "inflection",
+  "jinja2",
+  "jsonschema",
+  "jwst",
+  "jwst_reffiles",
+  "matplotlib",
+  "nodejs",
+  "numpy",
+  "numpydoc",
+  "pandas",
+  "psycopg2-binary",
+  "pysiaf",
+  "pyvo",
+  "scipy",
+  "sqlalchemy",
+  "stdatamodels",
+  "wtforms",
+]
+dynamic = ["version"]
+
+[project.optional-dependencies]
+test = [
+  "pytest",
+  "pytest-cov",
+  "pytest-mock",
+]  
+docs = [
+  "sphinx",
+  "sphinx_rtd_theme",
+  "stsci_rtd_theme",
+]
+
+[project.license]
+file = "LICENSE"
+content-type = "text/plain"
+
 [build-system]
-requires = ["setuptools<=65.5.0",
-			"numpy",
-			"wheel",
-			"setuptools_scm"]
+requires = ["setuptools>=61.2,<=65.5.0", "numpy", "wheel", "setuptools_scm"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools]
+include-package-data = true
+
+[tool.setuptools.packages.find]
+namespaces = false
+
+[tool.setuptools_scm]
+
+[tool.pytest]
+junit_family = "xunit2"
+addopts = "--ignore=jwql/website/apps/jwql/static"

setup.py

@@ -1,64 +1,6 @@
 import numpy as np
 from setuptools import setup
-from setuptools import find_packages
-
-VERSION = '1.1.1'
-
-AUTHORS = 'Matthew Bourque, Lauren Chambers, Misty Cracraft, Mike Engesser, Mees Fix, Joe Filippazzo, Bryan Hilbert, '
-AUTHORS += 'Graham Kanarek, Teagan King, Catherine Martlin, Shannon Osborne, Maria Pena-Guerrero, Johannes Sahlmann, '
-AUTHORS += 'Ben Sunnquist, Brian York'
-
-DESCRIPTION = 'The James Webb Space Telescope Quicklook Project'
-
-REQUIRES = [
-    'asdf',
-    'astropy',
-    'astroquery',
-    'bandit',
-    'bokeh<3',
-    'crds',
-    'cryptography',
-    'django',
-    'flake8',
-    'inflection',
-    'ipython',
-    'jinja2',
-    'jsonschema',
-    'jwst',
-    'jwst_reffiles',
-    'matplotlib',
-    'nodejs',
-    'numpy',
-    'numpydoc',
-    'pandas',
-    'psycopg2',
-    'pysiaf',
-    'pytest',
-    'pytest-cov',
-    'pytest-mock',
-    'pyvo',
-    'scipy',
-    'sphinx',
-    'sphinx_rtd_theme',
-    'sqlalchemy',
-    'stdatamodels',
-    'stsci_rtd_theme',
-    'twine',
-    'wtforms'
-]
 
 setup(
-    name='jwql',
-    version=VERSION,
-    description=DESCRIPTION,
-    url='https://github.com/spacetelescope/jwql.git',
-    author=AUTHORS,
-    author_email='[email protected]',
-    license='BSD',
-    keywords=['astronomy', 'python'],
-    classifiers=['Programming Language :: Python'],
-    packages=find_packages(),
-    install_requires=REQUIRES,
-    include_package_data=True,
     include_dirs=[np.get_include()],
 )