Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

refactor: remove finch conversion, support zstd and lzma in wasm #3521

Merged
merged 2 commits into from
Feb 4, 2025

Conversation

luizirber
Copy link
Member

Address sourmash-bio/branchwater#41

Allow zstd and lzma in wasm.

Removed finch conversion because it has conflicts with lzma version, but also... I don't think it was ever used? People can stick to 0.18.0 and we can bring it back if needed.

Copy link

codecov bot commented Feb 3, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.98%. Comparing base (cf47079) to head (7ffd065).
Report is 1 commits behind head on latest.

Additional details and impacted files
@@            Coverage Diff             @@
##           latest    #3521      +/-   ##
==========================================
- Coverage   88.02%   87.98%   -0.05%     
==========================================
  Files         137      136       -1     
  Lines       22312    22230      -82     
  Branches     2225     2225              
==========================================
- Hits        19640    19558      -82     
  Misses       2359     2359              
  Partials      313      313              
Flag Coverage Δ
hypothesis-py 25.43% <ø> (ø)
python 92.32% <ø> (ø)
rust 81.92% <ø> (-0.16%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@luizirber luizirber marked this pull request as ready for review February 4, 2025 00:39
@luizirber luizirber requested a review from a team February 4, 2025 00:39
Copy link
Contributor

@bluegenes bluegenes left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm! Shame we have to bump minor version just for this, but 🤷🏻‍♀️

@luizirber
Copy link
Member Author

lgtm! Shame we have to bump minor version just for this, but 🤷🏻‍♀️

yeah, removing a feature is a breaking change... we can also keep finch and not enable lzma in niffler, which would be fine too (I don't see much genomic data in xz format?)

@luizirber luizirber merged commit dc292f4 into latest Feb 4, 2025
42 of 43 checks passed
@luizirber luizirber deleted the lirber/zstd_wasm branch February 4, 2025 01:43
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants