verify output

sourmash-bio · Jun 16, 2021 · 14a88a7 · 14a88a7
1 parent 207a813
commit 14a88a7
Show file tree

Hide file tree

Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/src/sourmash/sig/__main__.py b/src/sourmash/sig/__main__.py
@@ -603,7 +603,7 @@ def filter_fn(it):
     notify("extracted {} signatures from {} file(s)", len(save_sigs),
            len(args.signatures))
     if picklist:
-        notify(f"for given picklist, found {len(picklist.found)} matches of {len(picklist.pickset)} total")
+        notify(f"for given picklist, found {len(picklist.found)} matches to {len(picklist.pickset)} distinct values")
         n_missing = len(picklist.pickset - picklist.found)
         if n_missing:
             notify(f"WARNING: {n_missing} missing picklist values.")

diff --git a/tests/test_cmd_signature.py b/tests/test_cmd_signature.py
@@ -1140,6 +1140,14 @@ def test_sig_extract_8_picklist_md5(runtmp):
 
     assert actual_extract_sig == test_extract_sig
 
+    err = runtmp.last_result.err
+
+    print(err)
+    assert "loaded 1 distinct values into picklist." in err
+    assert "loaded 2 total that matched ksize & molecule type" in err
+    assert "extracted 1 signatures from 2 file(s)" in err
+    assert "for given picklist, found 1 matches to 1 distinct values" in err
+
 
 def test_sig_extract_8_picklist_name(runtmp):
     # extract 47 from 47, using a picklist w/full md5