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Add warning/error for over 1000/5000 Foldmason inputs #214

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Run time

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Job	Run time
build (frontend, mmseqs)	1m 39s
build (frontend, foldseek)	2m 30s
build (backend, mmseqs)	2m 33s
build (backend, foldseek)	3m 4s
	9m 46s