Merge pull request #2 from simontorres/setting_rtd

Setting Read The docs

docs/Makefile

@@ -4,9 +4,9 @@
 # You can set these variables from the command line.
 SPHINXOPTS    =
 SPHINXBUILD   = python -msphinx
-SPHINXPROJ    = ReferenceLampsLibrary
-SOURCEDIR     = source
-BUILDDIR      = build
+SPHINXPROJ    = GoodmanLamps
+SOURCEDIR     = .
+BUILDDIR      = _build
 
 # Put it first so that "make" without argument is like "make help".
 help:

docs/source/conf.py → docs/conf.py

@@ -24,10 +24,9 @@
 # sys.path.append(os.path.abspath('sphinxext'))
 
 __version__ = __import__('goodman_lamps').__version__
+# __version__ = '0.1.0'
 
-
-extensions = ['matplotlib.sphinxext.only_directives',
-              'matplotlib.sphinxext.plot_directive']
+extensions = ['matplotlib.sphinxext.plot_directive']
 # -- General configuration ------------------------------------------------
 
 # If your documentation needs a minimal Sphinx version, state it here.
@@ -93,6 +92,8 @@
 
 html_theme = 'sphinx_rtd_theme'
 
+html_logo = '_static/soar_logo.png'
+
 # Theme options are theme-specific and customize the look and feel of a theme
 # further.  For a list of options available for each theme, see the
 # documentation.

docs/source/plots/plot_1200m0.py → docs/plots/plot_1200m0.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M0')

docs/source/plots/plot_1200m1.py → docs/plots/plot_1200m1.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M1')

docs/source/plots/plot_1200m2.py → docs/plots/plot_1200m2.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M2')

docs/source/plots/plot_1200m3.py → docs/plots/plot_1200m3.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M3')

docs/source/plots/plot_1200m4.py → docs/plots/plot_1200m4.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M4')

docs/source/plots/plot_1200m5.py → docs/plots/plot_1200m5.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M5')

docs/source/plots/plot_1200m6.py → docs/plots/plot_1200m6.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M6')

docs/source/plots/plot_1200m7.py → docs/plots/plot_1200m7.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='1200M7')

docs/source/plots/plot_400m1.py → docs/plots/plot_400m1.py

@@ -1,8 +1,6 @@
 from __future__ import absolute_import
 
-import glob
-
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='400M1')

docs/source/plots/plot_400m2.py → docs/plots/plot_400m2.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='400M2')

docs/source/plots/plot_600Blue.py → docs/plots/plot_600Blue.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='600Blue')

docs/source/plots/plot_600Mid.py → docs/plots/plot_600Mid.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='600Mid')

docs/source/plots/plot_600Red.py → docs/plots/plot_600Red.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='600Red')

docs/source/plots/plot_600UV.py → docs/plots/plot_600UV.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='600UV')

docs/source/plots/plot_930m1.py → docs/plots/plot_930m1.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='930M1')

docs/source/plots/plot_930m2.py → docs/plots/plot_930m2.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='930M2')

docs/source/plots/plot_930m3.py → docs/plots/plot_930m3.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='930M3')

docs/source/plots/plot_930m4.py → docs/plots/plot_930m4.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='930M4')

docs/source/plots/plot_930m5.py → docs/plots/plot_930m5.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='930M5')

docs/source/plots/plot_930m6.py → docs/plots/plot_930m6.py

@@ -1,6 +1,6 @@
 from __future__ import absolute_import
 
-from goodman_lamps.tools.create_plot import create_plot
+from goodman_lamps.goodman_lamps import create_plot
 
 if __name__ == '__main__':
     create_plot(mode='930M6')

docs/source/plots_1200.rst → docs/plots_1200.rst

@@ -4,7 +4,7 @@
 1200 M0
 *******
 
-..  .. plot:: plots/plot_1200m0.py
+.. plot:: plots/plot_1200m0.py
 
 1200 M1
 *******

docs/source/plots_400.rst → docs/plots_400.rst

@@ -4,9 +4,6 @@
 400 M1
 ******
 
-Testing plots
-
-
 .. plot:: plots/plot_400m1.py
 
 400 M2

environment.yml

@@ -0,0 +1,20 @@
+name: goodman_lamps_2
+channels:
+  - astroconda
+dependencies:
+  - qt
+  - astropy
+  - matplotlib
+  - numpy
+  - pandas==0.23.0
+  - pip
+  - scipy
+  - pip:
+      - pyqt5
+      - ccdproc
+      - coveralls
+      - m2r
+      - sphinx
+      - sphinx_rtd_theme
+      - sphinxcontrib.napoleon
+      - goodman_pipeline==1.2.1.dev6

goodman_lamps/__init__.py

@@ -2,4 +2,4 @@
 
 from .version import __version__
 
-from . import tools
+from .goodman_lamps import create_plot

goodman_lamps/tools/create_plot.py → goodman_lamps/goodman_lamps.py

@@ -8,7 +8,7 @@
 import glob
 from ccdproc import CCDData
 
-from pipeline.wcs import WCS
+from goodman_pipeline.wcs import WCS
 
 goodman_wcs = WCS()
 
@@ -87,8 +87,14 @@ def create_plot(mode):
     data_path = os.path.dirname(__import__('goodman_lamps').__file__)
     search_pattern = os.path.join(data_path,
                                   'data/lamps/*{:s}*.fits'.format(mode))
+    print(data_path)
+    print(search_pattern)
 
-    for file_name in glob.glob(search_pattern):
+    file_list = glob.glob(search_pattern)
+    for _file in file_list:
+        print(_file)
+
+    for file_name in file_list:
         fig, ax = plt.subplots(figsize=(16, 7))
 
         ccd = CCDData.read(file_name, unit='adu')
@@ -126,6 +132,8 @@ def create_plot(mode):
         plt.tight_layout()
         plt.show()
 
+    print('END. {}'.format(mode))
+
 
 # print(dir(__import__('goodman_lamps').__file__))
 # # for mod in sys.modules:

goodman_lamps/version.py

@@ -1,2 +1,2 @@
 # This is an automatic generated file please do not edit
-__version__ = '0.0.1.dev1'
+__version__ = '0.1.1.dev1'

readthedocs.yml

@@ -1,5 +1,17 @@
+version: 2
+
+sphinx:
+  configuration: docs/conf.py
+
+formats: all
+
 python:
-    version: 3.5
-    setup_py_install: true
-    extra_requirements:
-        - docs
+  version: 3.6
+  install:
+    - method: pip
+      path: .
+    - method: setuptools
+      path: .
+
+conda:
+  environment: environment.yml

requirements.txt

@@ -0,0 +1,12 @@
+recommonmark
+numpy
+pandas
+ccdproc
+coveralls
+astroplan
+matplotlib
+scipy
+astropy
+sphinx
+sphinxcontrib.napoleon
+sphinx_rtd_theme

setup.cfg

@@ -24,4 +24,4 @@ edit_on_github = False
 github_project = soar-telescope/goodman-lamps-lib
 # install_requires = astropy six gwcs scipy
 # version should be PEP440 compatible (http://www.python.org/dev/peps/pep-0440)
-version = 0.0.1.dev1
+version = 0.1.1.dev1