Skip to content

Files

Latest commit

author
Alicia Schep
Jan 22, 2016
56e5110 · Jan 22, 2016

History

History
17 lines (10 loc) · 818 Bytes

README.md

File metadata and controls

17 lines (10 loc) · 818 Bytes

NucleoATAC

Python package for calling nucleosomes using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).

Published Open Access at Genome Research: http://genome.cshlp.org/content/early/2015/08/27/gr.192294.115?top=1

Please use GitHub Issues to bring up any errors that occur with software rather than emailing authors.

Note on Versions:

  • version 0 represents code used for biorxiv manuscript
  • version 0.2.1 was used for Genome Research manuscript (See Supplemental Information as well)

Documentation can be found at http://nucleoatac.readthedocs.org/en/latest/

If you want to easily read in NucleoATAC outputs into R for further processing or exploration, check out NucleoATACR