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1. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

   Forked from stjude/ChIPseqSpikeInFree

   A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

   R

2. ATAC ATAC Public

   Forked from riverlee/ATAC

   Perl

3. epitools epitools Public

   A suite of tools I developed to automate and simplify common high-throughput epigenomics data analysis techniques

   Shell

4. NucleoATAC NucleoATAC Public

   Forked from GreenleafLab/NucleoATAC

   nucleosome calling using ATAC-seq

   Python

5. bds_atac bds_atac Public

   Forked from kundajelab/atac_dnase_pipelines

   ATAC-seq processing pipeline

   Java

6. ChIP-seq-analysis ChIP-seq-analysis Public

   Forked from crazyhottommy/ChIP-seq-analysis

   ChIP-seq analysis notes from Tommy Tang

   Python