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[r] Port resume-mode to R#2405

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mojaveazure merged 21 commits intomainsingle-cell-data/TileDB-SOMA:mainfrom paulhoffman/sc-42217/r-port-resume-mode-processing-from-pythonsingle-cell-data/TileDB-SOMA:paulhoffman/sc-42217/r-port-resume-mode-processing-from-pythonCopy head branch name to clipboardApr 24, 2024

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Commits

Commits on Apr 24, 2024

• [r] Port resume-mode to R

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• Simplify testing suite

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• Helper function to read SOMA join IDs from an array

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• Add support for resume-mode for data.frames

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• Add tests for dense arrays

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• Better checking for SOMA array registration

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• Update docs to include resume-mode for collections

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• Add support for resume-mode with sparse arrays

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• Update docs

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• Update docs

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• Plumb resume-mode through write_soma.Seurat() and helper methods

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• Workaround for a bug in SeuratObject

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• More workaround

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• Plumb resume-mode through SCE write path

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• Improvements to .register_soma_object

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• Better handling of arrays/collections for resume-mode on TileDB Cloud

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• Allow force-reopen

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• Improve tests

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• Update docs

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• Update write_soma() for Bioc objects w/ resume mode on TileDB Cloud

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• Update changelog

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