[r] Update changed URL in three vignette files (#2632) (#2633)

Co-authored-by: Dirk Eddelbuettel <[email protected]>
single-cell-data · May 23, 2024 · a1f894c · a1f894c
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diff --git a/apis/r/.Rbuildignore b/apis/r/.Rbuildignore
@@ -25,6 +25,7 @@ tiledbsoma.tar.gz
 src/libtiledbsoma/build
 src/libtiledbsoma/test
 src/libtiledbsoma/docs
+src/libtiledbsoma/.editorconfig
 
 # vscode
 ^\.vscode$

diff --git a/apis/r/vignettes/soma-experiment-queries.Rmd b/apis/r/vignettes/soma-experiment-queries.Rmd
@@ -24,7 +24,7 @@ library(tiledbsoma)
 
 ## Example data
 
-Load the bundled `SOMAExperiment` containing a subsetted version of the 10X genomics [PBMC dataset](https://mojaveazure.github.io/seurat-object/reference/pbmc_small.html) provided by SeuratObject. This will return a `SOMAExperiment` object.
+Load the bundled `SOMAExperiment` containing a subsetted version of the 10X genomics [PBMC dataset](https://satijalab.github.io/seurat-object/reference/pbmc_small.html) provided by SeuratObject. This will return a `SOMAExperiment` object.
 
 ```{r}
 experiment <- load_dataset("soma-exp-pbmc-small")
@@ -103,7 +103,7 @@ iterator$read_next()
 iterator$read_complete()
 ```
 
-We can also access the expression via `X()`. 
+We can also access the expression via `X()`.
 
 Similarly to `obs()` and `var()`, `X()` is intended for iteration, but in this case we have access to two different iterators, and thus `X()` returns a reader that gives you access to an iterator for `arrow::Table` and one for `Matrix::sparse_matrix`.
 
@@ -168,7 +168,7 @@ As well as the X matrix in two different formats:
 ```{r}
 query$X("counts")$tables()$concat()
 ```
- 
+
 `Matrix::sparse_matrix` in `dgTMatrix` format.
 
 ```{r}

diff --git a/apis/r/vignettes/soma-objects.Rmd b/apis/r/vignettes/soma-objects.Rmd
@@ -22,7 +22,7 @@ library(tiledbsoma)
 
 ## Example data
 
-Extract the bundled `SOMAExperiment` containing a subsetted version of the 10X genomics [PBMC dataset](https://mojaveazure.github.io/seurat-object/reference/pbmc_small.html) provided by `SeuratObject`. This will return a file path for the extracted dataset.
+Extract the bundled `SOMAExperiment` containing a subsetted version of the 10X genomics [PBMC dataset](https://satijalab.github.io/seurat-object/reference/pbmc_small.html) provided by `SeuratObject`. This will return a file path for the extracted dataset.
 
 ```{r}
 uri <- extract_dataset("soma-exp-pbmc-small")

diff --git a/apis/r/vignettes/soma-reading.Rmd b/apis/r/vignettes/soma-reading.Rmd
@@ -19,7 +19,7 @@ library(tiledbsoma)
 
 ## Example data
 
-Load the bundled `SOMAExperiment` containing a subsetted version of the 10X genomics [PBMC dataset](https://mojaveazure.github.io/seurat-object/reference/pbmc_small.html) provided by SeuratObject. This will return a `SOMAExperiment` object. This is a small dataset that easily fits into memory, but we'll focus on operations that can easily scale to larger datasets as well.
+Load the bundled `SOMAExperiment` containing a subsetted version of the 10X genomics [PBMC dataset](https://satijalab.github.io/seurat-object/reference/pbmc_small.html) provided by SeuratObject. This will return a `SOMAExperiment` object. This is a small dataset that easily fits into memory, but we'll focus on operations that can easily scale to larger datasets as well.
 
 ```{r}
 experiment <- load_dataset("soma-exp-pbmc-small")