Skip to content

Commit

Permalink
fix missing tcga in similarity exp tables
Browse files Browse the repository at this point in the history
  • Loading branch information
sigven committed Jun 24, 2024
2 parents 6c198e1 + 99981c0 commit 919a416
Show file tree
Hide file tree
Showing 4 changed files with 55 additions and 55 deletions.
18 changes: 9 additions & 9 deletions conda/env/lock/pcgr-linux-64.lock
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# Generated by conda-lock.
# platform: linux-64
# input_hash: c67e863b6b1bcd492711b5f53604da4f89462c6bc44b751d8390cb0e604636d3
# input_hash: 2ff13560abe69355168fbc7b521cb4191954cecab62c22224c6651a731135fde
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_3.tar.bz2#b7fe67ef984501e8089a142f1f58ab2f
Expand All @@ -11,9 +11,9 @@ https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.2-ha770c72_0.conda#8c92
https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.12-4_cp312.conda#dccc2d142812964fcc6abdc97b672dff
https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8
https://conda.anaconda.org/bioconda/linux-64/vcfanno-0.3.5-h9ee0642_1.tar.bz2#8a4602d50382770bdc2d789c3fbd1862
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_10.conda#9404d1686e63142d41acc72ef876a588
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_11.conda#8c462ced2af33648195dc9459f331f31
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_10.conda#bbb96c5e7a11ef8ca2b666fe9fe3d199
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_11.conda#0b3b218a596bb4c3854cc9ee799f94e5
https://conda.anaconda.org/conda-forge/linux-64/argtable2-2.13-hd590300_1004.conda#d7d089e975b1213c2a0f94e592b7b422
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda#dcde58ff9a1f30b0037a2315d1846d1f
Expand All @@ -24,10 +24,10 @@ https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172b
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda#e7ba12deb7020dd080c6c70e7b6f6a3d
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-h59595ed_2.conda#172bcc51059416e7ce99e7b528cede83
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-h3d2ce59_10.conda#e3896e5c2dd1cbabaf4abb3254df47b0
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-h3d2ce59_11.conda#c485da4fdb454539f852a90ae06e9bb7
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
https://conda.anaconda.org/conda-forge/linux-64/libntlm-1.4-h7f98852_1002.tar.bz2#e728e874159b042d92b90238a3cb0dc2
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-hc0a3c3a_10.conda#ea50441ab527f23ffa108ade07e2fde0
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-hc0a3c3a_11.conda#eaa8ea74083fb4a78ae19e431e556003
https://conda.anaconda.org/conda-forge/linux-64/libunistring-0.9.10-h7f98852_0.tar.bz2#7245a044b4a1980ed83196176b78b73a
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
Expand All @@ -43,15 +43,15 @@ https://conda.anaconda.org/bioconda/linux-64/bedtools-2.31.1-hf5e1c6e_1.tar.bz2#
https://conda.anaconda.org/bioconda/linux-64/clustalo-1.2.4-hdbdd923_8.tar.bz2#9baa8c81d5ca18a5336fe748bfa8e7a9
https://conda.anaconda.org/bioconda/linux-64/clustalw-2.1-h4ac6f70_10.tar.bz2#e7756d46d67ea32f90b684f6770f290d
https://conda.anaconda.org/conda-forge/linux-64/expat-2.6.2-h59595ed_0.conda#53fb86322bdb89496d7579fe3f02fd61
https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-h59595ed_1.conda#e358c7c5f6824c272b5034b3816438a7
https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda#c94a5994ef49749880a8139cf9afcbe1
https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff
https://conda.anaconda.org/conda-forge/linux-64/libabseil-20240116.2-cxx17_h59595ed_0.conda#682bdbe046a68f749769b492f3625c5c
https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.22.5-h661eb56_2.conda#dd197c968bf9760bba0031888d431ede
https://conda.anaconda.org/conda-forge/linux-64/libdb-6.2.32-h9c3ff4c_0.tar.bz2#3f3258d8f841fbac63b36b75bdac1afd
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
https://conda.anaconda.org/conda-forge/linux-64/libevent-2.1.12-hf998b51_1.conda#a1cfcc585f0c42bf8d5546bb1dfb668d
https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-devel-0.22.5-h59595ed_2.conda#b63d9b6da3653179a278077f0de20014
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_10.conda#a78f7b3d951665c4c57578a8d3787993
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_11.conda#4c3e460d6acf8e43e4ce8bf405187eb7
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.46.0-hde9e2c9_0.conda#18aa975d2094c34aef978060ae7da7d8
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
Expand Down Expand Up @@ -148,7 +148,7 @@ https://conda.anaconda.org/bioconda/noarch/perl-types-serialiser-1.01-pl5321hdfd
https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2024.1-pyhd8ed1ab_0.conda#98206ea9954216ee7540f0c773f2104d
https://conda.anaconda.org/conda-forge/noarch/pytz-2024.1-pyhd8ed1ab_0.conda#3eeeeb9e4827ace8c0c1419c85d590ad
https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.1-py312h98912ed_1.conda#e3fd78d8d490af1d84763b9fe3f2e552
https://conda.anaconda.org/conda-forge/noarch/setuptools-70.0.0-pyhd8ed1ab_0.conda#c8ddb4f34a208df4dd42509a0f6a1c89
https://conda.anaconda.org/conda-forge/noarch/setuptools-70.1.0-pyhd8ed1ab_0.conda#258e66f95f814d51ada2a1fe9274039b
https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
https://conda.anaconda.org/bioconda/linux-64/viennarna-2.6.4-py312pl5321hc60241a_2.tar.bz2#75cf75a55e6d974779303172ef49f546
https://conda.anaconda.org/conda-forge/noarch/wheel-0.43.0-pyhd8ed1ab_1.conda#0b5293a157c2b5cd513dd1b03d8d3aae
Expand Down Expand Up @@ -201,7 +201,7 @@ https://conda.anaconda.org/bioconda/linux-64/pybedtools-0.10.0-py312ha1f7cf2_1.t
https://conda.anaconda.org/conda-forge/linux-64/scipy-1.13.1-py312hc2bc53b_0.conda#864b2399a9c998e17d1a9a4e0c601285
https://conda.anaconda.org/bioconda/noarch/vcf2maf-umccr-1.6.21.20230511-hdfd78af_0.tar.bz2#ec3a03df0bce17c35b2a2d1436c718ea
https://conda.anaconda.org/bioconda/linux-64/blast-2.15.0-pl5321h6f7f691_1.tar.bz2#f7e6a87317b5d00469d39a2d1ef2698f
https://conda.anaconda.org/pcgr/noarch/pcgr-1.4.1.9019-py_0.tar.bz2#c0e551dd45f5802f226f654f50e78c53
https://conda.anaconda.org/pcgr/noarch/pcgr-1.4.1.9020-py_0.tar.bz2#30d24697d650b290ce5ff29b9d87e520
https://conda.anaconda.org/bioconda/noarch/perl-http-message-6.36-pl5321hdfd78af_0.tar.bz2#a213d1308ffa8e0789996ae6ecda98ae
https://conda.anaconda.org/bioconda/noarch/perl-net-http-6.22-pl5321hdfd78af_0.tar.bz2#f3b44f2b9932c3def346e6ad9aabe43d
https://conda.anaconda.org/bioconda/noarch/perl-www-robotrules-6.02-pl5321hdfd78af_4.tar.bz2#8305f4ed6306b1125a8c8caf2f05aec8
Expand Down
10 changes: 5 additions & 5 deletions conda/env/lock/pcgr-osx-64.lock
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# Generated by conda-lock.
# platform: osx-64
# input_hash: 7985ef7bc19181daf269f76028a4367ccd9143de1434c49432cdc042b9cdd00a
# input_hash: 65030e1b7c08acc1a40ecc2b2b1f71f9d8a192d61a86261f0342cf9209214643
@EXPLICIT
https://conda.anaconda.org/conda-forge/osx-64/argtable2-2.13-h10d778d_1004.conda#7ebcbc431363dfbf9ae25e6a7205d414
https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h10d778d_5.conda#6097a6ca9ada32699b5fc4312dd6ef18
Expand Down Expand Up @@ -30,7 +30,7 @@ https://conda.anaconda.org/conda-forge/osx-64/libcxx-17.0.6-h88467a6_0.conda#0fe
https://conda.anaconda.org/conda-forge/osx-64/libedit-3.1.20191231-h0678c8f_2.tar.bz2#6016a8a1d0e63cac3de2c352cd40208b
https://conda.anaconda.org/conda-forge/osx-64/libintl-0.22.5-h5ff76d1_2.conda#3fb6774cb8cdbb93a6013b67bcf9716d
https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-h87427d6_6.conda#c0ef3c38a80c02ae1d86588c055184fc
https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-18.1.7-h15ab845_0.conda#57440310d92e93efd808c75fec50f94d
https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-18.1.8-h15ab845_0.conda#2c3c6c8aaf8728f87326964a82fdc7d8
https://conda.anaconda.org/conda-forge/osx-64/macports-legacy-support-1.2.4-hfdf4475_0.conda#bc8a8cb353ee9b626f9d2c4937be7740
https://conda.anaconda.org/conda-forge/osx-64/openssl-1.1.1w-h8a1eda9_0.conda#83cdb687c0caa41dad9d4941afcdfd64
https://conda.anaconda.org/bioconda/noarch/perl-algorithm-diff-1.1903-pl5321hdfd78af_3.tar.bz2#e66fb178d12c7e26622d863809a14fcc
Expand Down Expand Up @@ -78,7 +78,7 @@ https://conda.anaconda.org/bioconda/osx-64/bedtools-2.31.1-h6372da2_1.tar.bz2#ab
https://conda.anaconda.org/bioconda/osx-64/clustalo-1.2.4-h7133b54_8.tar.bz2#cb5f47a0f971ecca37aea71f0b9acc5e
https://conda.anaconda.org/bioconda/osx-64/clustalw-2.1-h85dcccf_10.tar.bz2#a3d76c53d3685e26245bcbf0ee89b3f5
https://conda.anaconda.org/conda-forge/osx-64/gettext-tools-0.22.5-h5ff76d1_2.conda#37e1cb0efeff4d4623a6357e37e0105d
https://conda.anaconda.org/conda-forge/osx-64/gmp-6.3.0-h73e2aa4_1.conda#92f8d748d95d97f92fc26cfac9bb5b6e
https://conda.anaconda.org/conda-forge/osx-64/gmp-6.3.0-hf036a51_2.conda#427101d13f19c4974552a4e5b072eef1
https://conda.anaconda.org/conda-forge/osx-64/icu-70.1-h96cf925_0.tar.bz2#376635049e9b9b0bb875efd39dcd7b3b
https://conda.anaconda.org/conda-forge/osx-64/krb5-1.20.1-h0165f36_0.conda#9345f11991753ef75a35754c83319db2
https://conda.anaconda.org/conda-forge/osx-64/libdb-6.2.32-he49afe7_0.tar.bz2#b685b11e8fd0aa0be67e65984c11a15c
Expand Down Expand Up @@ -162,7 +162,7 @@ https://conda.anaconda.org/bioconda/osx-64/pysam-0.20.0-py310h958c131_0.tar.bz2#
https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2024.1-pyhd8ed1ab_0.conda#98206ea9954216ee7540f0c773f2104d
https://conda.anaconda.org/conda-forge/noarch/pytz-2024.1-pyhd8ed1ab_0.conda#3eeeeb9e4827ace8c0c1419c85d590ad
https://conda.anaconda.org/conda-forge/osx-64/pyyaml-6.0.1-py310h6729b98_1.conda#d964cec3e7972e44bc4a328134b9eaf1
https://conda.anaconda.org/conda-forge/noarch/setuptools-70.0.0-pyhd8ed1ab_0.conda#c8ddb4f34a208df4dd42509a0f6a1c89
https://conda.anaconda.org/conda-forge/noarch/setuptools-70.1.0-pyhd8ed1ab_0.conda#258e66f95f814d51ada2a1fe9274039b
https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
https://conda.anaconda.org/bioconda/osx-64/viennarna-2.6.4-py310pl5321hb5a725e_0.tar.bz2#6852d7b92265aa9865387826d7b36277
https://conda.anaconda.org/conda-forge/noarch/wheel-0.43.0-pyhd8ed1ab_1.conda#0b5293a157c2b5cd513dd1b03d8d3aae
Expand Down Expand Up @@ -212,7 +212,7 @@ https://conda.anaconda.org/bioconda/noarch/perl-libwww-perl-6.67-pl5321hdfd78af_
https://conda.anaconda.org/bioconda/osx-64/pybedtools-0.10.0-py310h0b3aad1_1.tar.bz2#ade72e96268dba2ca0ba1f728dfe4c43
https://conda.anaconda.org/conda-forge/osx-64/scipy-1.13.1-py310h35d8cac_0.conda#97b362043d6a1dd28e7da5fbf277594d
https://conda.anaconda.org/conda-forge/osx-64/compiler-rt-12.0.1-he01351e_0.tar.bz2#aa2cb3794dae4a09f19c3b7169b5df1f
https://conda.anaconda.org/pcgr/noarch/pcgr-1.4.1.9019-py_0.tar.bz2#c0e551dd45f5802f226f654f50e78c53
https://conda.anaconda.org/pcgr/noarch/pcgr-1.4.1.9020-py_0.tar.bz2#30d24697d650b290ce5ff29b9d87e520
https://conda.anaconda.org/bioconda/noarch/perl-xml-dom-1.46-pl5321hdfd78af_1.tar.bz2#45b7ce435727456727f45b3e2121b23b
https://conda.anaconda.org/bioconda/osx-64/t-coffee-12.00.7fb08c2-h26a2512_0.tar.bz2#fe6f3532da0e9d3868b58ecd07f33744
https://conda.anaconda.org/bioconda/noarch/vcf2tsvpy-0.6.1-pyhda70652_0.tar.bz2#cb9612a58cefb7e2a144c759027c0a94
Expand Down
Loading

0 comments on commit 919a416

Please sign in to comment.