SeqKit v2.9.0

Please cite:

• Wei Shen*, Botond Sipos, and Liuyang Zhao. 2024. SeqKit2: A Swiss Army Knife for Sequence and Alignment Processing. iMeta e191. doi:10.1002/imt2.191.
  
• Wei Shen, Shuai Le, Yan Li*, and Fuquan Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.
  

Changes

• SeqKit v2.9.0 - 2024-11-01
  • seqkit:
    • Fix sequence ID parsing with the default regular expression (in this case, we actually use bytes.Index instead) for a rare case: "xxx\tyyy zzz" was wrongly parsed as "xxx\tyyy". #486
  • seqkit locate:
    • Fix -G/--non-greedy for tandem repeats, e.g., ATTCGATTCGATTCG (ATTCGx3).
  • seqkit grep/subseq:
    • Fix negative regions longer than sequence length. #479.
  • seqkit stats:
    • Add an extra column sum_n to count the number of ambiguous characters. #490

Links

OS	Arch	File, 中国镜像	Download Count
Linux	32-bit	seqkit_linux_386.tar.gz, 中国镜像
Linux	64-bit	seqkit_linux_amd64.tar.gz, 中国镜像
Linux	arm64	seqkit_linux_arm64.tar.gz, 中国镜像
macOS	64-bit	seqkit_darwin_amd64.tar.gz, 中国镜像
macOS	arm64	seqkit_darwin_arm64.tar.gz, 中国镜像
Windows	32-bit	seqkit_windows_386.exe.tar.gz, 中国镜像
Windows	64-bit	seqkit_windows_amd64.exe.tar.gz, 中国镜像

Notes

• please open an issuse to request binaries for other platforms.
• run seqkit version to check update !!!
• run seqkit genautocomplete to update shell autocompletion script !!!