Validation #1442
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Validation | |
| on: | |
| schedule: | |
| # Run at the end of every day | |
| - cron: "0 0 * * *" | |
| # manual trigger | |
| workflow_dispatch: | |
| jobs: | |
| validation_suite: | |
| # This workflow only runs on the origin org | |
| if: github.repository_owner == 'sgkit-dev' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| project_id: ${{ secrets.GCP_PROJECT_ID }} | |
| service_account_key: ${{ secrets.GCP_SA_KEY }} | |
| export_default_credentials: true | |
| - name: Download public test data (real HapMap data) | |
| run: gsutil -u $GCLOUD_PROJECT cp gs://sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip /tmp/ | |
| - name: Validate PC Relate | |
| run: ./validation/gwas/method/pc_relate/run.sh /tmp/hapmap_JPT_CHB_r23a_filtered.zip |