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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 375 43

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 240 37

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 136 23

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 134 47

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 87 26

Repositories

Showing 10 of 180 repositories
  • chunkflow Public

    Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

    seung-lab/chunkflow’s past year of commit activity
    Python 50 Apache-2.0 8 14 2 Updated Nov 26, 2024
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 375 LGPL-3.0 43 10 4 Updated Nov 26, 2024
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 134 BSD-3-Clause 47 79 6 Updated Nov 26, 2024
  • zmesh Public

    Marching Cubes & Mesh Simplification on multi-label 3D images.

    seung-lab/zmesh’s past year of commit activity
    C++ 60 GPL-3.0 8 2 2 Updated Nov 26, 2024
  • network-speed Public

    Application for testing network speed in a variety of configurations.

    seung-lab/network-speed’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 23, 2024
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 39 BSD-3-Clause 8 14 0 Updated Nov 22, 2024
  • fastmorph Public

    Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.

    seung-lab/fastmorph’s past year of commit activity
    C++ 13 GPL-3.0 3 3 0 Updated Nov 21, 2024
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 22 Apache-2.0 311 91 35 Updated Nov 20, 2024
  • tem2ng Public

    Convert raw TEM microscope images into a neuroglancer volume.

    seung-lab/tem2ng’s past year of commit activity
    Python 1 BSD-3-Clause 0 2 0 Updated Nov 19, 2024
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 44 GPL-3.0 17 19 5 Updated Nov 13, 2024
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