HiCpro-WashU

Utility to transform HiC-Pro (https://github.com/nservant/HiC-Pro) results to visual pair-wise interactions in WashU epigenome browser.

Required dependencies

• R version > v3.3.1
• Samtools > v1.1

Usage

./HiCpro_WashU.sh matrix_file abs_bedfile

matrix_file = matrix HiC-Pro output (path+file)

abs_bedfile = abs HiC-pro output (path+file)

Both matrix and abs.bedfile require to have the same HiC resolution

Resulting files *.bed.gz and *.bed.gz.tbi must be moved to a web server to be linked to the pair-wise entry in WashU Epigenome browser (http://epigenomegateway.wustl.edu/browser/)