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Merge pull request #2082 from marehr/week03
pull changes from release-3.0.2 into master - progress of week 03
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,307 @@ | ||
| name: SeqAn3 CI | ||
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| on: [push, pull_request] | ||
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| env: | ||
| CMAKE_VERSION: 3.7.2 | ||
| DOXYGEN_VERSION: 1.8.19 | ||
| SEQAN3_NO_VERSION_CHECK: 1 | ||
| TZ: Europe/Berlin | ||
|
|
||
| jobs: | ||
| cancel: | ||
| name: "Cancel previous runs" | ||
| runs-on: ubuntu-20.04 | ||
| steps: | ||
| - uses: styfle/[email protected] | ||
| with: | ||
| access_token: ${{ github.token }} | ||
| build: | ||
| needs: cancel | ||
| name: ${{ matrix.name }} | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - name: "Coverage gcc7" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-7" | ||
| cc: "gcc-7" | ||
| build: coverage | ||
| build_type: Debug | ||
|
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||
| - name: "Unit gcc9 (c++2a) on Linux" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-9" | ||
| cc: "gcc-9" | ||
| build: unit | ||
| build_type: Release | ||
| cxx_flags: "-std=c++2a" | ||
|
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| - name: "Unit gcc9 (c++2a) on macOS" | ||
| os: macos-10.15 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-9" | ||
| cc: "gcc-9" | ||
| build: unit | ||
| build_type: Release | ||
| cxx_flags: "-std=c++2a" | ||
|
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| - name: "Unit gcc10 (c++17) on Linux" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-10" | ||
| cc: "gcc-10" | ||
| build: unit | ||
| build_type: Release | ||
| cxx_flags: "-std=c++17 -fconcepts" | ||
|
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||
| - name: "Unit gcc10 (c++17) on macOS" | ||
| os: macos-10.15 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-10" | ||
| cc: "gcc-10" | ||
| build: unit | ||
| build_type: Release | ||
| cxx_flags: "-std=c++17 -fconcepts" | ||
|
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| - name: "Unit gcc10 (c++20) on Linux" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-10" | ||
| cc: "gcc-10" | ||
| build: unit | ||
| build_type: Release | ||
|
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||
| - name: "Unit gcc10 (c++20) on macOS" | ||
| os: macos-10.15 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-10" | ||
| cc: "gcc-10" | ||
| build: unit | ||
| build_type: Release | ||
|
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||
| - name: "Unit gcc8 on Linux" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-8" | ||
| cc: "gcc-8" | ||
| build: unit | ||
| build_type: Release | ||
|
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||
| - name: "Unit gcc8 on macOS" | ||
| os: macos-10.15 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-8" | ||
| cc: "gcc-8" | ||
| build: unit | ||
| build_type: Release | ||
|
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||
| - name: "Unit gcc7 on Linux" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-7" | ||
| cc: "gcc-7" | ||
| build: unit | ||
| build_type: Release | ||
|
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||
| - name: "Unit gcc7 on macOS" | ||
| os: macos-10.15 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-7" | ||
| cc: "gcc-7" | ||
| build: unit | ||
| build_type: Release | ||
|
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||
| - name: "Performance gcc7" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-7" | ||
| cc: "gcc-7" | ||
| build: performance | ||
| build_type: Release | ||
|
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||
| - name: "Header gcc7" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-7" | ||
| cc: "gcc-7" | ||
| build: header | ||
| build_type: Release | ||
|
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| - name: "Snippet gcc7" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: true | ||
| requires_ccache: true | ||
| cxx: "g++-7" | ||
| cc: "gcc-7" | ||
| build: snippet | ||
| build_type: Release | ||
|
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| - name: "Documentation" | ||
| os: ubuntu-20.04 | ||
| requires_toolchain: false | ||
| requires_ccache: false | ||
| build: documentation | ||
|
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| steps: | ||
| - name: Checkout SeqAn3 | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| path: seqan3 | ||
| submodules: true | ||
|
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| - name: Checkout SeqAn2 | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| repository: seqan/seqan | ||
| ref: develop | ||
| path: seqan3/submodules/seqan | ||
|
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| - name: Setup CMake | ||
| shell: bash | ||
| run: | | ||
| if [ "$RUNNER_OS" == "Linux" ]; then | ||
| OS="Linux" | ||
| else | ||
| OS="Darwin" | ||
| fi | ||
| mkdir -p /tmp/cmake-download | ||
| wget --no-clobber --quiet --directory-prefix=/tmp/cmake-download/ https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/cmake-${CMAKE_VERSION}-${OS}-x86_64.tar.gz | ||
| tar -C /tmp/ -zxf /tmp/cmake-download/cmake-${CMAKE_VERSION}-${OS}-x86_64.tar.gz | ||
| echo "::add-path::/tmp/cmake-${CMAKE_VERSION}-${OS}-x86_64/bin" # Only available in subsequent steps! | ||
| - name: Setup Doxygen | ||
| if: matrix.build == 'documentation' | ||
| shell: bash | ||
| run: | | ||
| sudo apt-get install texlive-font-utils ghostscript texlive-latex-extra graphviz libclang-9-dev libclang-cpp9 # graphviz for dot, latex to parse formulas, libclang for doxygen | ||
| mkdir -p /tmp/doxygen-download | ||
| wget --no-clobber --quiet --directory-prefix=/tmp/doxygen-download/ https://sourceforge.net/projects/doxygen/files/rel-${DOXYGEN_VERSION}/doxygen-${DOXYGEN_VERSION}.linux.bin.tar.gz | ||
| tar -C /tmp/ -zxf /tmp/doxygen-download/doxygen-${DOXYGEN_VERSION}.linux.bin.tar.gz | ||
| echo "::add-path::/tmp/doxygen-${DOXYGEN_VERSION}/bin" # Only available in subsequent steps! | ||
| - name: Add package source | ||
| if: matrix.requires_toolchain && runner.os == 'Linux' | ||
| shell: bash | ||
| run: sudo add-apt-repository --yes ppa:ubuntu-toolchain-r/ppa && sudo apt-get update | ||
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| - name: Install ccache | ||
| if: matrix.requires_ccache | ||
| shell: bash | ||
| run: | | ||
| if [ "$RUNNER_OS" == "Linux" ]; then | ||
| sudo apt-get install --yes ccache | ||
| else | ||
| brew install --force-bottle ccache | ||
| fi | ||
| - name: Install compiler ${{ matrix.cxx }} | ||
| if: matrix.requires_toolchain | ||
| shell: bash | ||
| run: | | ||
| if [ "$RUNNER_OS" == "Linux" ]; then | ||
| sudo apt-get install --yes ${{ matrix.cxx }} | ||
| else | ||
| brew install --force-bottle $(echo "${{ matrix.cxx }}" | sed "s/++-/cc@/g") | ||
| fi | ||
| - name: Install lcov | ||
| if: matrix.build == 'coverage' | ||
| shell: bash | ||
| run: | | ||
| sudo apt-get install --yes lcov | ||
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/gcov-7 100 | ||
| - name: Prepare ccache | ||
| if: matrix.requires_ccache | ||
| id: ccache_prepare | ||
| shell: cmake -P {0} | ||
| run: | | ||
| string(TIMESTAMP current_date "%Y-%m-%d-%H;%M;%S") | ||
| message("::set-output name=timestamp::${current_date}") | ||
| - name: Load ccache | ||
| if: matrix.requires_ccache | ||
| uses: actions/[email protected] | ||
| with: | ||
| path: .ccache | ||
| key: ${{ matrix.name }}-ccache-${{ steps.ccache_prepare.outputs.timestamp }} | ||
| restore-keys: | | ||
| ${{ matrix.name }}-ccache- | ||
| - name: Configure tests | ||
| env: | ||
| CXX: ${{ matrix.cxx }} | ||
| CC: ${{ matrix.cc }} | ||
| shell: bash | ||
| run: | | ||
| mkdir seqan3-build | ||
| cd seqan3-build | ||
| cmake ../seqan3/test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}" | ||
| if [[ "${{ matrix.build }}" =~ ^(unit|header|snippet|coverage)$ ]]; then | ||
| make gtest_project | ||
| fi | ||
| if [[ "${{ matrix.build }}" =~ ^(performance)$ ]]; then | ||
| make gbenchmark_project | ||
| fi | ||
| - name: Build tests | ||
| env: | ||
| CCACHE_BASEDIR: ${{ github.workspace }} | ||
| CCACHE_DIR: ${{ github.workspace }}/.ccache | ||
| CCACHE_COMPRESS: true | ||
| CCACHE_COMPRESSLEVEL: 6 | ||
| CCACHE_MAXSIZE: 5G | ||
| shell: bash | ||
| run: | | ||
| ccache -p || true | ||
| cd seqan3-build | ||
| make -k -j2 | ||
| ccache -s || true | ||
| - name: Run tests | ||
| shell: bash | ||
| run: | | ||
| cd seqan3-build | ||
| if [[ "${{ matrix.build }}" =~ ^(coverage)$ ]]; then | ||
| : ; else | ||
| if [[ "${{ matrix.build }}" =~ ^(snippet)$ ]]; then | ||
| ctest . --output-on-failure]; else | ||
| ctest . -j2 --output-on-failure | ||
| fi | ||
| fi | ||
| - name: Submit coverage build | ||
| if: matrix.build == 'coverage' | ||
| shell: bash | ||
| run: bash <(curl -s https://codecov.io/bash) -f ./seqan3-build/seqan3_coverage -R ./seqan3 || echo 'Codecov failed to upload' | ||
|
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| - name: Package documentation | ||
| if: matrix.build == 'documentation' | ||
| continue-on-error: true | ||
| run: tar -zcf documentation.tar.gz seqan3-build | ||
|
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| - name: Upload documentation | ||
| if: matrix.build == 'documentation' | ||
| continue-on-error: true | ||
| uses: actions/upload-artifact@v2 | ||
| with: | ||
| name: documentation | ||
| path: documentation.tar.gz |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -3,6 +3,10 @@ os: linux | |
| dist: focal | ||
| language: cpp | ||
|
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| branches: | ||
| only: | ||
| - master | ||
|
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| git: | ||
| submodules: true | ||
|
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This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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