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Merge pull request #1185 from smehringer/argument_parser
[FIX, FEATURE] Fix initialising the version_check_option. Add multi-level argument parsing.
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| Original file line number | Diff line number | Diff line change |
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| # How to write an argument parser with subcommands {#subcommand_arg_parse} | ||
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| [TOC] | ||
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| This HowTo shows you how to write an argument parser with subcommand like `git push` using SeqAn3. | ||
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| \tutorial_head{Easy, 15 min, \ref tutorial_argument_parser, } | ||
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| # Motivation | ||
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| A common use case for command line tools, e.g. `git`, is to have multiple subcommands, e.g. `git fetch` or `git push`. | ||
| Each subcommand has its own set of options and its own help page. | ||
| This HowTo explains how this can be done with the seqan3::argument_parser and serves as a copy'n'paste source. | ||
| If you are new to SeqAn, we recommend to do the basic | ||
| \link tutorial_argument_parser argument parser tutorial \endlink before you read further. | ||
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| # A subcommand argument parser | ||
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| In order to keep parsing with subcommands straightforward and simple, | ||
| the seqan3::argument_parser provides an advanced interface that internally takes care of the correct input parsing. | ||
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| You simply need to specify the names of the subcommands when constructing your top-level argument parser: | ||
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| \snippet doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp construction | ||
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| \attention You can still add flags to your top-level parser if needed but **no (positional) options**. | ||
| This avoids ambiguous parsing (e.g. subcommand fasta given file extension fasta | ||
| `./myfasta_parser --filext fasta fasta ...`). | ||
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| After calling seqan3::argument_parser::parse() on your top-level parser, | ||
| you can then access the sub-parser via the function seqan3::argument_parser::get_sub_parser(): | ||
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| \snippet doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp get_sub_parser | ||
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| The sub-parser's **seqan3::argument_parser::info::app_name will be set to the user chosen sub command**. | ||
| For example, if the user calls | ||
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| ``` | ||
| max$ ./mygit push -h | ||
| ``` | ||
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| then the sub-parser will be named `mygit-push` and will be instantiated with all arguments | ||
| followed by the keyword `push` which in this case triggers printing the help page (`-h`). | ||
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| That's it. Here is a full example of a subcommand argument parser you can try and adjust to your needs: | ||
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| \include doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp |
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doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp
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| #include <seqan3/argument_parser/all.hpp> | ||
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| using namespace seqan3; | ||
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| // ===================================================================================================================== | ||
| // pull | ||
| // ===================================================================================================================== | ||
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| struct pull_arguments | ||
| { | ||
| std::string repository{}; | ||
| std::string branch{}; | ||
| bool progress{false}; | ||
| }; | ||
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| int run_git_pull(argument_parser & parser) | ||
| { | ||
| pull_arguments args{}; | ||
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| parser.add_positional_option(args.repository, "The repository name to pull from."); | ||
| parser.add_positional_option(args.branch, "The branch name to pull from."); | ||
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| try | ||
| { | ||
| parser.parse(); | ||
| } | ||
| catch (parser_invalid_argument const & ext) | ||
| { | ||
| debug_stream << "[Error git pull] " << ext.what() << "\n"; | ||
| return -1; | ||
| } | ||
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| debug_stream << "Git pull with repository " << args.repository << " and branch " << args.branch << std::endl; | ||
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| return 0; | ||
| } | ||
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| // ===================================================================================================================== | ||
| // push | ||
| // ===================================================================================================================== | ||
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| struct push_arguments | ||
| { | ||
| std::string repository{}; | ||
| std::vector<std::string> branches{}; | ||
| bool push_all{false}; | ||
| }; | ||
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| int run_git_push(argument_parser & parser) | ||
| { | ||
| push_arguments args{}; | ||
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| parser.add_positional_option(args.repository, "The repository name to push to."); | ||
| parser.add_positional_option(args.branches, "The branch names to push (if none are given, push current)."); | ||
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| try | ||
| { | ||
| parser.parse(); | ||
| } | ||
| catch (parser_invalid_argument const & ext) | ||
| { | ||
| debug_stream << "[Error git push] " << ext.what() << "\n"; | ||
| return -1; | ||
| } | ||
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| debug_stream << "Git push with repository " << args.repository << " and branches " << args.branches << std::endl; | ||
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| return 0; | ||
| } | ||
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| // ===================================================================================================================== | ||
| // main | ||
| // ===================================================================================================================== | ||
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| int main(int argc, char const ** argv) | ||
| { | ||
| //![construction] | ||
| argument_parser top_level_parser{"mygit", argc, argv, true, {"push", "pull"}}; | ||
| //![construction] | ||
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| // Add information and flags to your top-level parser just as you would do with a normal one. | ||
| // Note that all flags directed at the top-level parser must be specified BEFORE the subcommand key word. | ||
| // Because of ambiguity, we do not allow any (positional) options for the top-level parser. | ||
| top_level_parser.info.description.push_back("You can push or pull from a remote repository."); | ||
| bool flag{false}; | ||
| top_level_parser.add_flag(flag, 'f', "flag", "some flag"); | ||
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| try | ||
| { | ||
| top_level_parser.parse(); // trigger command line parsing | ||
| } | ||
| catch (parser_invalid_argument const & ext) // catch user errors | ||
| { | ||
| debug_stream << "[Error] " << ext.what() << "\n"; // customise your error message | ||
| return -1; | ||
| } | ||
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| //![get_sub_parser] | ||
| argument_parser & sub_parser = top_level_parser.get_sub_parser(); // hold a reference to the sub_parser | ||
| //![get_sub_parser] | ||
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| std::cout << "Proceed to sub parser." << std::endl; | ||
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| if (sub_parser.info.app_name == std::string_view{"mygit-pull"}) | ||
| run_git_pull(sub_parser); | ||
| else if (sub_parser.info.app_name == std::string_view{"mygit-push"}) | ||
| run_git_push(sub_parser); | ||
| else | ||
| throw std::logic_error{"I do not know sub parser " + sub_parser.info.app_name}; | ||
| } |
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