iGenVar Pre-Release 0.0.3 - Call Deletions and Insertions, hirachical Clustering, Codecoverage

Welcome to the pre-release 0.0.3 of iGenVar!

What is new?

• We can now call deletions and insertions from long read data.
• We implemented a better clustering method using the hirachichal clustering algorithm by Daniel Müllner. This is now our default method.
• We added a check for our codecoverage and can proudly say that we have a coverage of over 91%.

iGenVar Pre-Release 0.0.2 - Modularisation

Welcome to the pre-release 0.0.2 of iGenVar!
With the new version we have merged our two binaries into one, that is, instead of running them one after the other, you can now run our app with ./bin/iGenVar and get a vcf output directly.
We have also opted for a module-based structure and have made some changes to the infra structure in this respect.
Last but not least, we have created a small example that you can use to run and test the app for the first time:
./bin/iGenVar -j ./test/data/mini_example.sam -o ./test/data/output.vcf -m cigar_string -m split_read -l 5

iGenVar Pre-Release 0.0.1 - Merging AppTemplate and add documentation

Welcome to the pre-release 0.0.1 of iGenVar!
With the new version we merged the into our prototype.
Now iGenVar has a test environment and a first meaningful file structure. We have also added a lot of documentation that is built with doxygen.
You can now run the tests with make test and build a documentation with make doc.