corrected strandedness

sdparekh · Mar 15, 2018 · a901291 · a901291
1 parent 5a345de
commit a901291
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/zUMIs-dge.R b/zUMIs-dge.R
@@ -21,8 +21,8 @@ option_list = list(
               help="Study name", metavar="character"),
   make_option(c("--cores"), type="integer", default=10,
               help="Number of threads", metavar="integer"),
-  make_option(c("--strandedness"), type="logical", default=TRUE,
-              help="Is your RNA-seq library stranded?", metavar="logical"),
+  make_option(c("--strandedness"), type="integer", default=0,
+              help="0 unsranded, 1 stranded, 2 reverse stranded", metavar="integer"),
   make_option(c("--bcstart"), type="integer", default=1,
               help="Start position of cell barcode in the read", metavar="integer"),
   make_option(c("--bcend"), type="integer", default=6,