Merge pull request #285 from xaviml/patch-1

cat / head change in zUMIs.sh
sdparekh · Sep 18, 2021 · 3a786f8 · 3a786f8
2 parents 60f7965 + e0a12c3
commit 3a786f8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/zUMIs.sh b/zUMIs.sh
@@ -247,7 +247,7 @@ if [[ "${whichStage}" == "Filtering" ]] ; then
       pref=$(basename ${f} .gz)
       l=$(ls ${tmpMerge}${pref}* | sed "s|${tmpMerge}${pref}||" | sed 's/.gz//')
   else
-      cat ${f} | head -n 4000000 > ${tmpMerge}/${project}.1mio.check.fq
+      head -n 4000000 ${f} > ${tmpMerge}/${project}.1mio.check.fq
       smallsize=$(stat --printf="%s" ${tmpMerge}/${project}.1mio.check.fq)
       rm ${tmpMerge}/${project}.1mio.check.fq
       nreads=$(expr ${fullsize} \* 1000000 / ${smallsize})