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Increase maximum depth for quick-select to 16 #8021

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Aug 26, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.unreleased.md
Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ For upgrade instructions, please check the [migration guide](MIGRATIONS.released
- The overall performance was improved (especially for the segments tab). [#7958](https://github.com/scalableminds/webknossos/pull/7958)
- The performance for the skeleton tab was improved. [#7989](https://github.com/scalableminds/webknossos/pull/7989)
- Upgraded ant icons to version 5.4. [#8007](https://github.com/scalableminds/webknossos/pull/8007)
- Increased maximum depth for ai-based quick select from 5 to 16. [#8021](https://github.com/scalableminds/webknossos/pull/8021)
- Zarr-streaming now uses the new unit-aware voxel size. This means that [wk-libs client v0.14.25 or newer](https://github.com/scalableminds/webknossos-libs/releases) is needed for dataset zarr streaming. [#8012](https://github.com/scalableminds/webknossos/pull/8012)

### Fixed
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4 changes: 3 additions & 1 deletion app/controllers/DatasetController.scala
Original file line number Diff line number Diff line change
Expand Up @@ -418,7 +418,9 @@ class DatasetController @Inject()(userService: UserService,
datastoreClient <- datasetService.clientFor(dataset)(GlobalAccessContext)
targetMagSelectedBbox: BoundingBox = request.body.surroundingBoundingBox / request.body.mag
_ <- bool2Fox(targetMagSelectedBbox.size.sorted.z <= 1024 && targetMagSelectedBbox.size.sorted.y <= 1024) ?~> s"Target-mag selected bbox must be smaller than 1024×1024×depth (or transposed), got ${targetMagSelectedBbox.size}"
_ <- bool2Fox(targetMagSelectedBbox.size.sorted.x <= 12) ?~> s"Target-mag selected bbox depth must be at most 12"
// The maximum depth of 16 also needs to be adapted in the front-end
// (at the time of writing, in MAX_DEPTH_FOR_SAM in quick_select_settings.tsx).
_ <- bool2Fox(targetMagSelectedBbox.size.sorted.x <= 16) ?~> s"Target-mag selected bbox depth must be at most 16"
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_ <- bool2Fox(targetMagSelectedBbox.size.sorted.z == targetMagSelectedBbox.size.sorted.y) ?~> s"Target-mag selected bbox must equally sized long edges, got ${targetMagSelectedBbox.size}"
_ <- Fox.runIf(request.body.interactionType == SAMInteractionType.BOUNDING_BOX)(
bool2Fox(request.body.selectionTopLeftX.isDefined &&
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13 changes: 9 additions & 4 deletions frontend/javascripts/oxalis/model/sagas/quick_select_ml_saga.ts
Original file line number Diff line number Diff line change
Expand Up @@ -257,17 +257,22 @@ export default function* performQuickSelect(
const userBoxRelativeToMaskInMag = userBoxInMag.offset(V3.negate(maskBoxInMag.min));

let wOffset = 0;
const currentEstimationInputForBBoxEstimation = {
min: userBoxRelativeToMaskInMag.getMinUV(activeViewport),
max: userBoxRelativeToMaskInMag.getMaxUV(activeViewport),
};
for (const mask of masks) {
const targetW = alignedUserBoxMag1.min[thirdDim] + labeledResolution[thirdDim] * wOffset;

const { min: minUV, max: maxUV } = estimateBBoxInMask(
mask,
{
min: userBoxRelativeToMaskInMag.getMinUV(activeViewport),
max: userBoxRelativeToMaskInMag.getMaxUV(activeViewport),
},
currentEstimationInputForBBoxEstimation,
MAXIMUM_PADDING_ERROR,
);
// Use the estimated bbox as input for the next iteration so that
// moving segments don't "exit" the used bbox at the some point in W.
currentEstimationInputForBBoxEstimation.min = minUV;
currentEstimationInputForBBoxEstimation.max = maxUV;

// Span a bbox from the estimated values (relative to the mask)
// and move it by the mask's min position to achieve a global
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Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@ import features from "features";
import FastTooltip from "components/fast_tooltip";
import { QuestionCircleOutlined } from "@ant-design/icons";

// The maximum depth of 16 also needs to be adapted in the back-end
// (at the time of writing, in segmentAnythingMask in DatasetController.scala).
const MAX_DEPTH_FOR_SAM = 16;

const OPTIONS_WITH_DISABLED = [
{ label: "Dark Segment", value: "dark" },
{ label: "Light Segment", value: "light" },
Expand Down Expand Up @@ -73,7 +77,7 @@ export function AiQuickSelectControls() {
label="Prediction Depth"
min={1}
value={quickSelectConfig.predictionDepth || 1}
max={5}
max={MAX_DEPTH_FOR_SAM}
step={1}
onChange={onChangePredictionDepth}
/>
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