Fix right-clicking mesh of invisible layer

CHANGELOG.unreleased.md

@@ -27,6 +27,7 @@ For upgrade instructions, please check the [migration guide](MIGRATIONS.released
 - Fixed a bug where some annotation times would be shown double. [#7787](https://github.com/scalableminds/webknossos/pull/7787)
 - Fixed a bug where no columns were shown in the time tracking overview. [#7803](https://github.com/scalableminds/webknossos/pull/7803)
 - Fixed a bug where ad-hoc meshes for coarse magnifications would have gaps. [#7799](https://github.com/scalableminds/webknossos/pull/7799)
+- Fixed that right-clicking a mesh in the 3D viewport did crash when the corresponding segmentation layer was not visible. [#7811](https://github.com/scalableminds/webknossos/pull/7811)
 
 ### Removed
 

frontend/javascripts/libs/diffable_map.ts

@@ -48,7 +48,7 @@ class DiffableMap<K extends number, V> {
     this[idSymbol] = id;
   }
 
-  get(key: K): V {
+  getOrThrow(key: K): V {
     const value = this.getNullable(key);
 
     if (value !== undefined) {
@@ -325,7 +325,7 @@ export function diffDiffableMaps<K extends number, V>(
     const newOnlyB = onlyB.filter((id) => !missingChangedIdSet.has(id));
     // Ensure that these elements are not equal before adding them to "changed"
     const newChanged = changed.concat(
-      missingChangedIds.filter((id) => mapA.get(id) !== mapB.get(id)),
+      missingChangedIds.filter((id) => mapA.getOrThrow(id) !== mapB.getOrThrow(id)),
     );
     return {
       changed: newChanged,

frontend/javascripts/oxalis/api/api_latest.ts

@@ -379,7 +379,10 @@ class TracingApi {
     if (treeId != null) {
       tree = skeletonTracing.trees[treeId];
       assertExists(tree, `Couldn't find tree ${treeId}.`);
-      assertExists(tree.nodes.get(nodeId), `Couldn't find node ${nodeId} in tree ${treeId}.`);
+      assertExists(
+        tree.nodes.getOrThrow(nodeId),
+        `Couldn't find node ${nodeId} in tree ${treeId}.`,
+      );
     } else {
       tree = _.values(skeletonTracing.trees).find((__) => __.nodes.has(nodeId));
       assertExists(tree, `Couldn't find node ${nodeId}.`);
@@ -599,7 +602,7 @@ class TracingApi {
    * console.log(segment.groupId)
    */
   getSegment(segmentId: number, layerName: string): Segment {
-    const segment = getSegmentsForLayer(Store.getState(), layerName).get(segmentId);
+    const segment = getSegmentsForLayer(Store.getState(), layerName).getOrThrow(segmentId);
     // Return a copy to avoid mutations by third-party code.
     return { ...segment };
   }
@@ -1070,8 +1073,8 @@ class TracingApi {
     const getPos = (node: Readonly<MutableNode>) => getNodePosition(node, state);
 
     for (const edge of tree.edges.all()) {
-      const sourceNode = tree.nodes.get(edge.source);
-      const targetNode = tree.nodes.get(edge.target);
+      const sourceNode = tree.nodes.getOrThrow(edge.source);
+      const targetNode = tree.nodes.getOrThrow(edge.target);
       lengthNmAcc += V3.scaledDist(getPos(sourceNode), getPos(targetNode), datasetScale);
       lengthVxAcc += V3.length(V3.sub(getPos(sourceNode), getPos(targetNode)));
     }
@@ -1155,12 +1158,12 @@ class TracingApi {
 
     while (priorityQueue.length > 0) {
       const [nextNodeId, distance] = priorityQueue.dequeue();
-      const nextNodePosition = getPos(sourceTree.nodes.get(nextNodeId));
+      const nextNodePosition = getPos(sourceTree.nodes.getOrThrow(nextNodeId));
 
       // Calculate the distance to all neighbours and update the distances.
       for (const { source, target } of sourceTree.edges.getEdgesForNode(nextNodeId)) {
         const neighbourNodeId = source === nextNodeId ? target : source;
-        const neighbourPosition = getPos(sourceTree.nodes.get(neighbourNodeId));
+        const neighbourPosition = getPos(sourceTree.nodes.getOrThrow(neighbourNodeId));
         const neighbourDistance =
           distance + V3.scaledDist(nextNodePosition, neighbourPosition, datasetScale);
 

frontend/javascripts/oxalis/api/api_v2.ts

@@ -185,7 +185,10 @@ class TracingApi {
     if (treeId != null) {
       tree = skeletonTracing.trees[treeId];
       assertExists(tree, `Couldn't find tree ${treeId}.`);
-      assertExists(tree.nodes.get(nodeId), `Couldn't find node ${nodeId} in tree ${treeId}.`);
+      assertExists(
+        tree.nodes.getNullable(nodeId),
+        `Couldn't find node ${nodeId} in tree ${treeId}.`,
+      );
     } else {
       tree = _.values(skeletonTracing.trees).find((__) => __.nodes.has(nodeId));
       assertExists(tree, `Couldn't find node ${nodeId}.`);

frontend/javascripts/oxalis/geometries/skeleton.ts

@@ -346,8 +346,8 @@ class Skeleton {
 
         case "createEdge": {
           const tree = skeletonTracing.trees[update.value.treeId];
-          const source = tree.nodes.get(update.value.source);
-          const target = tree.nodes.get(update.value.target);
+          const source = tree.nodes.getOrThrow(update.value.source);
+          const target = tree.nodes.getOrThrow(update.value.target);
           this.createEdge(tree.treeId, source, target);
           break;
         }
@@ -507,8 +507,8 @@ class Skeleton {
     }
 
     for (const edge of tree.edges.all()) {
-      const source = tree.nodes.get(edge.source);
-      const target = tree.nodes.get(edge.target);
+      const source = tree.nodes.getOrThrow(edge.source);
+      const target = tree.nodes.getOrThrow(edge.target);
       this.createEdge(tree.treeId, source, target);
     }
 

frontend/javascripts/oxalis/model/accessors/skeletontracing_accessor.ts

@@ -67,7 +67,7 @@ export function getActiveNode(skeletonTracing: SkeletonTracing): Maybe<Node> {
   const { activeTreeId, activeNodeId } = skeletonTracing;
 
   if (activeTreeId != null && activeNodeId != null) {
-    return Maybe.Just(skeletonTracing.trees[activeTreeId].nodes.get(activeNodeId));
+    return Maybe.Just(skeletonTracing.trees[activeTreeId].nodes.getOrThrow(activeNodeId));
   }
 
   return Maybe.Nothing();
@@ -95,7 +95,7 @@ export function getActiveNodeFromTree(skeletonTracing: SkeletonTracing, tree: Tr
   const { activeNodeId } = skeletonTracing;
 
   if (activeNodeId != null) {
-    return Maybe.Just(tree.nodes.get(activeNodeId));
+    return Maybe.Just(tree.nodes.getOrThrow(activeNodeId));
   }
 
   return Maybe.Nothing();
@@ -159,12 +159,12 @@ export function getNodeAndTree(
     let node = null;
 
     if (nodeId != null) {
-      node = tree.nodes.get(nodeId);
+      node = tree.nodes.getOrThrow(nodeId);
     } else {
       const { activeNodeId } = skeletonTracing;
 
       if (activeNodeId != null) {
-        node = tree.nodes.get(activeNodeId);
+        node = tree.nodes.getOrThrow(activeNodeId);
       }
     }
 

frontend/javascripts/oxalis/model/edge_collection.ts

@@ -168,7 +168,7 @@ export function diffEdgeCollections(
   const mapDiff = diffDiffableMaps(edgeCollectionA.outMap, edgeCollectionB.outMap);
 
   const getEdgesForNodes = (nodeIds: number[], diffableMap: EdgeMap) =>
-    _.flatten(nodeIds.map((nodeId) => diffableMap.get(nodeId)));
+    _.flatten(nodeIds.map((nodeId) => diffableMap.getOrThrow(nodeId)));
 
   const edgeDiff = {
     onlyA: getEdgesForNodes(mapDiff.onlyA, edgeCollectionA.outMap),
@@ -179,8 +179,8 @@ export function diffEdgeCollections(
     // For each changedNodeIndex there is at least one outgoing edge which was added or removed.
     // So, check for each outgoing edge whether it only exists in A or B
     const outgoingEdgesDiff = Utils.diffArrays(
-      edgeCollectionA.outMap.get(changedNodeIndex),
-      edgeCollectionB.outMap.get(changedNodeIndex),
+      edgeCollectionA.outMap.getOrThrow(changedNodeIndex),
+      edgeCollectionB.outMap.getOrThrow(changedNodeIndex),
     );
     edgeDiff.onlyA = edgeDiff.onlyA.concat(outgoingEdgesDiff.onlyA);
     edgeDiff.onlyB = edgeDiff.onlyB.concat(outgoingEdgesDiff.onlyB);

frontend/javascripts/oxalis/model/helpers/nml_helpers.ts

@@ -679,7 +679,7 @@ function splitTreeIntoComponents(
       color: tree.color,
       name: `${tree.name}_${i}`,
       comments: tree.comments.filter((comment) => nodeIdsSet.has(comment.nodeId)),
-      nodes: new DiffableMap(nodeIds.map((nodeId) => [nodeId, tree.nodes.get(nodeId)])),
+      nodes: new DiffableMap(nodeIds.map((nodeId) => [nodeId, tree.nodes.getOrThrow(nodeId)])),
       branchPoints: tree.branchPoints.filter((bp) => nodeIdsSet.has(bp.nodeId)),
       timestamp: tree.timestamp,
       edges: EdgeCollection.loadFromArray(edges),

frontend/javascripts/oxalis/model/reducers/skeletontracing_reducer_helpers.ts

@@ -304,7 +304,7 @@ function splitTreeByNodes(
       // ts-expect-error ts-migrate(2345) FIXME: Argument of type 'number | undefined' is not assig... Remove this comment to see the full error message
       const edges = activeTree.edges.getEdgesForNode(nodeId);
       visitedNodes[nodeId] = true;
-      newTree.nodes.mutableSet(nodeId, activeTree.nodes.get(nodeId));
+      newTree.nodes.mutableSet(nodeId, activeTree.nodes.getOrThrow(nodeId));
 
       for (const edge of edges) {
         const edgeHash = getEdgeHash(edge);
@@ -888,7 +888,7 @@ export function extractPathAsNewTree(
   ).map((newTree) => {
     let lastNodeId = null;
     for (const nodeId of pathOfNodeIds) {
-      const node: MutableNode = { ...sourceTree.nodes.get(nodeId) };
+      const node: MutableNode = { ...sourceTree.nodes.getOrThrow(nodeId) };
       newTree.nodes.mutableSet(nodeId, node);
       if (lastNodeId != null) {
         const newEdge: Edge = {

frontend/javascripts/oxalis/model/sagas/proofread_saga.ts

@@ -340,8 +340,8 @@ function* handleSkeletonProofreadingAction(action: Action): Saga<void> {
     Toast.error("Proofreading is currently not supported when the skeleton layer is transformed.");
     return;
   }
-  const sourceNodePosition = sourceTree.nodes.get(sourceNodeId).untransformedPosition;
-  const targetNodePosition = targetTree.nodes.get(targetNodeId).untransformedPosition;
+  const sourceNodePosition = sourceTree.nodes.getOrThrow(sourceNodeId).untransformedPosition;
+  const targetNodePosition = targetTree.nodes.getOrThrow(targetNodeId).untransformedPosition;
 
   const idInfos = yield* call(getAgglomerateInfos, preparation.getMappedAndUnmapped, [
     sourceNodePosition,

frontend/javascripts/oxalis/model/sagas/skeletontracing_saga.ts

@@ -496,13 +496,13 @@ function* diffNodes(
   }
 
   for (const nodeId of addedNodeIds) {
-    const node = nodes.get(nodeId);
+    const node = nodes.getOrThrow(nodeId);
     yield createNode(treeId, node);
   }
 
   for (const nodeId of changedNodeIds) {
-    const node = nodes.get(nodeId);
-    const prevNode = prevNodes.get(nodeId);
+    const node = nodes.getOrThrow(nodeId);
+    const prevNode = prevNodes.getOrThrow(nodeId);
 
     if (updateNodePredicate(prevNode, node)) {
       yield updateNode(treeId, node);

frontend/javascripts/oxalis/model/sagas/volumetracing_saga.tsx

@@ -647,7 +647,7 @@ function* uncachedDiffSegmentLists(
   }
 
   for (const segmentId of addedSegmentIds) {
-    const segment = newSegments.get(segmentId);
+    const segment = newSegments.getOrThrow(segmentId);
     yield createSegmentVolumeAction(
       segment.id,
       segment.somePosition,
@@ -658,8 +658,8 @@ function* uncachedDiffSegmentLists(
   }
 
   for (const segmentId of bothSegmentIds) {
-    const segment = newSegments.get(segmentId);
-    const prevSegment = prevSegments.get(segmentId);
+    const segment = newSegments.getOrThrow(segmentId);
+    const prevSegment = prevSegments.getOrThrow(segmentId);
 
     if (segment !== prevSegment) {
       yield updateSegmentVolumeAction(

frontend/javascripts/oxalis/view/context_menu.tsx

@@ -1653,7 +1653,7 @@ function ContextMenuInner(propsWithInputRef: Props) {
     );
   }
   if (segments != null && maybeClickedMeshId != null) {
-    const segmentName = segments.get(maybeClickedMeshId)?.name;
+    const segmentName = segments.getNullable(maybeClickedMeshId)?.name;
     if (segmentName != null) {
       const maxSegmentNameLength = 18;
       infoRows.push(

frontend/javascripts/oxalis/view/right-border-tabs/segments_tab/segments_view.tsx

@@ -1374,7 +1374,7 @@ class SegmentsView extends React.Component<Props, State> {
   getSelectedSegments = (): Segment[] => {
     const allSegments = this.props.segments;
     if (allSegments == null) return [];
-    return this.props.selectedIds.segments.map((segmentId) => allSegments.get(segmentId));
+    return this.props.selectedIds.segments.map((segmentId) => allSegments.getOrThrow(segmentId));
   };
 
   getSelectedItemKeys = () => {

frontend/javascripts/test/geometries/skeleton.spec.ts

@@ -93,8 +93,8 @@ test.serial("Skeleton should initialize correctly using the store's state", (t)
       }
 
       for (const edge of tree.edges.all()) {
-        const sourcePosition = tree.nodes.get(edge.source).untransformedPosition;
-        const targetPosition = tree.nodes.get(edge.target).untransformedPosition;
+        const sourcePosition = tree.nodes.getOrThrow(edge.source).untransformedPosition;
+        const targetPosition = tree.nodes.getOrThrow(edge.target).untransformedPosition;
         edgePositions = edgePositions.concat(sourcePosition).concat(targetPosition);
         edgeTreeIds.push(tree.treeId, tree.treeId);
       }

frontend/javascripts/test/libs/diffable_map.spec.ts

@@ -10,7 +10,7 @@ test("DiffableMap should be empty", (t) => {
   const emptyMap = new DiffableMap<number, number>();
   t.is(emptyMap.size(), 0);
   t.false(emptyMap.has(1));
-  t.throws(() => emptyMap.get(1));
+  t.throws(() => emptyMap.getOrThrow(1));
 });
 test("DiffableMap should behave immutable on set/delete operations", (t) => {
   const emptyMap = new DiffableMap();
@@ -19,22 +19,22 @@ test("DiffableMap should behave immutable on set/delete operations", (t) => {
   t.false(emptyMap.has(1));
   t.is(map1.size(), 1);
   t.true(map1.has(1));
-  t.is(map1.get(1), 1);
+  t.is(map1.getOrThrow(1), 1);
   const map2 = map1.set(1, 2);
-  t.is(map1.get(1), 1);
-  t.is(map2.get(1), 2);
+  t.is(map1.getOrThrow(1), 1);
+  t.is(map2.getOrThrow(1), 2);
   const map3 = map2.delete(1);
-  t.is(map2.get(1), 2);
+  t.is(map2.getOrThrow(1), 2);
   t.false(map3.has(1));
 });
 test("DiffableMap should be clonable and mutable on clone/mutableSet", (t) => {
   const map1 = new DiffableMap().set(1, 1);
   const map2 = map1.clone();
   map2.mutableSet(1, 2);
   map2.mutableSet(2, 2);
-  t.is(map2.get(1), 2);
-  t.is(map2.get(2), 2);
-  t.is(map1.get(1), 1);
+  t.is(map2.getOrThrow(1), 2);
+  t.is(map2.getOrThrow(2), 2);
+  t.is(map1.getOrThrow(1), 1);
   t.false(map1.has(2));
   // Id should be the same since the internal structures look the same
   t.is(map1.getId(), map2.getId());
@@ -46,8 +46,8 @@ test("DiffableMap should be instantiable with Array<[key, value]>", (t) => {
     [1, 2],
     [3, 4],
   ]);
-  t.is(map.get(1), 2);
-  t.is(map.get(3), 4);
+  t.is(map.getOrThrow(1), 2);
+  t.is(map.getOrThrow(3), 4);
   t.is(map.size(), 2);
 });
 test("DiffableMap should work properly when it handles more items than the batch size", (t) => {
@@ -61,7 +61,7 @@ test("DiffableMap should work properly when it handles more items than the batch
 
   // Check for [i, 2*i] values
   for (let i = 0; i < 100; i++) {
-    t.is(currentMap.get(i), 2 * i);
+    t.is(currentMap.getOrThrow(i), 2 * i);
   }
 
   t.is(emptyMap.size(), 0);
@@ -78,7 +78,7 @@ test("DiffableMap should work properly when it handles more items than the batch
     if (i % 10 === 0) {
       t.false(currentMap.has(i));
     } else {
-      t.is(currentMap.get(i), 2 * i);
+      t.is(currentMap.getOrThrow(i), 2 * i);
     }
   }
 });

frontend/javascripts/test/libs/nml.spec.ts

@@ -304,7 +304,7 @@ test("NML serializing and parsing should yield the same state even when addition
   if (existingNodeMap == null) {
     throw new Error("Unexpected null value.");
   }
-  const existingNode = existingNodeMap.get(1);
+  const existingNode = existingNodeMap.getOrThrow(1);
   const newNodeMap = existingNodeMap.set(1, {
     ...existingNode,
     additionalCoordinates: [{ name: "t", value: 123 }],
@@ -416,7 +416,7 @@ test("NML serializer should produce correct NMLs with additional coordinates", (
   if (existingNodeMap == null) {
     throw new Error("Unexpected null value.");
   }
-  const existingNode = existingNodeMap.get(1);
+  const existingNode = existingNodeMap.getOrThrow(1);
   const newNodeMap = existingNodeMap.set(1, {
     ...existingNode,
     additionalCoordinates: [{ name: "t", value: 123 }],
@@ -694,10 +694,10 @@ test("addTreesAndGroups reducer should assign new node and tree ids", (t) => {
   t.is(newSkeletonTracing.trees[3].treeId, 3);
   t.is(newSkeletonTracing.trees[4].treeId, 4);
   t.is(newSkeletonTracing.trees[3].nodes.size(), 4);
-  t.is(newSkeletonTracing.trees[3].nodes.get(8).id, 8);
-  t.is(newSkeletonTracing.trees[3].nodes.get(9).id, 9);
+  t.is(newSkeletonTracing.trees[3].nodes.getOrThrow(8).id, 8);
+  t.is(newSkeletonTracing.trees[3].nodes.getOrThrow(9).id, 9);
   t.is(newSkeletonTracing.trees[4].nodes.size(), 3);
-  t.is(newSkeletonTracing.trees[4].nodes.get(12).id, 12);
+  t.is(newSkeletonTracing.trees[4].nodes.getOrThrow(12).id, 12);
 
   const getSortedEdges = (edges: EdgeCollection) => _.sortBy(edges.asArray(), "source");
 

frontend/javascripts/test/model/edge_collection.spec.ts

@@ -30,13 +30,13 @@ test("EdgeCollection should have symmetrical inMap and outMap", (t) => {
   t.is(edgeCollection.size(), 3);
   t.is(edgeCollection.outMap.size(), 3);
   t.is(edgeCollection.inMap.size(), 2);
-  t.deepEqual(edgeCollection.outMap.get(0), [edgeA]);
+  t.deepEqual(edgeCollection.outMap.getOrThrow(0), [edgeA]);
   t.false(edgeCollection.outMap.has(1));
-  t.deepEqual(edgeCollection.outMap.get(2), [edgeB]);
-  t.deepEqual(edgeCollection.outMap.get(3), [edgeC]);
+  t.deepEqual(edgeCollection.outMap.getOrThrow(2), [edgeB]);
+  t.deepEqual(edgeCollection.outMap.getOrThrow(3), [edgeC]);
   t.false(edgeCollection.inMap.has(0));
-  t.deepEqual(edgeCollection.inMap.get(1), [edgeA, edgeB]);
-  t.deepEqual(edgeCollection.inMap.get(2), [edgeC]);
+  t.deepEqual(edgeCollection.inMap.getOrThrow(1), [edgeA, edgeB]);
+  t.deepEqual(edgeCollection.inMap.getOrThrow(2), [edgeC]);
   t.false(edgeCollection.inMap.has(3));
   t.deepEqual(edgeCollection.getEdgesForNode(2), [edgeB, edgeC]);
 });