Code

Globalize Floodfill Script#461

Code

Merged

philippotto merged 33 commits intomasterscalableminds/webknossos-libs:masterfrom globalize-floodfillscalableminds/webknossos-libs:globalize-floodfillCopy head branch name to clipboardNov 26, 2021

+493-44

Commits

Commits on Oct 21, 2021

• initial version of floodfill script

  

  Youri K

  committed
  c11e42e

• use skip argument

  

  Youri K

  committed
  ebf2623

• sort imports

  

  Youri K

  committed
  12db38d

• specify encoding and close file handle

  

  Youri K

  committed
  c3d878d

Commits on Nov 4, 2021

• improve floodfill performance

  

  Youri K

  committed
  65f8f43

• improve bounding box contains implementation

  

  Youri K

  committed
  f362d83

• sort imports

  

  Youri K

  committed
  d0e38f4

Commits on Nov 22, 2021

• Merge branch 'master' of github.com:scalableminds/webknossos-libs into globalize-floodfill

  philippotto

  committed
  0065d64

• integrate some PR feedback

  philippotto

  committed
  a15c5ae

• chmod +x, make parameters required and make logging less verbose

  philippotto

  committed
  919b216

Commits on Nov 24, 2021

• merge volume data by FS copy + apply strategy, floodfill over 1024-chunks and optimize that

  philippotto

  committed
  de337a5

• clean up merge code

  philippotto

  committed
  542dc7d

Commits on Nov 25, 2021

• implement FastVec3Int via subclassing

  philippotto

  committed
  eb911d4

• auto-compute bottomright in bounding box for performance reasons

  philippotto

  committed
  c95d1ab

• get rid of FastVec3Int by using a fast staticmethod instead

  philippotto

  committed
  f664445

• convert old wkw api usages in globalize_flood_fill to new dataset api and also use Vec3Int everywhere

  philippotto

  committed
  13f9d4f

Commits on Nov 26, 2021

• run full script

  philippotto

  committed
  8897b56

• auto-select correct chunk size

  philippotto

  committed
  f66814b

• rename some variables

  philippotto

  committed
  40c95e5

• don't use print

  philippotto

  committed
  5f53814

• remove 'slow' comments

  philippotto

  committed
  9698e87

• remove mag_headers logging

  philippotto

  committed
  d7a688e

• implement redownsample; fix instantiation of Vec3Int

  philippotto

  committed
  9fff34f

• format

  philippotto

  committed
  f549df3

• typing

  philippotto

  committed
  9094b7c

• linting

  philippotto

  committed
  0c6c209

• undo changes in annotation.py

  philippotto

  committed
  f69b061

• update changelog

  philippotto

  committed
  2eff893

• clean up argparser

  philippotto

  committed
  c3dfe6e

• verbose logging by default

  philippotto

  committed
  2c98e6e

• format

  philippotto

  committed
  6c98bbc

• Merge branch 'master' into globalize-floodfill

  philippotto

  authored
  3e63470

• remove redundant utils

  philippotto

  committed
  c50f9e0