[bug] group.colors in DoHeatmap not change in legend.

[xizhihui]

Hi, I wanna change the group colors to custom colors in DoHeatmap, but colors did not change in the legend.

library(Seurat)
library(patchwork)
DoHeatmap(pbmc_small) + DoHeatmap(pbmc_small, group.colors=c("0" = "yellow", "1" = "yellow", "2" = "yellow"))

sessionInfo()

R version 4.0.5 (2021-03-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.7 LTS

Matrix products: default
BLAS:   /opt/R/4.0.5/lib/R/lib/libRblas.so
LAPACK: /opt/R/4.0.5/lib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=zh_CN.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=zh_CN.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=zh_CN.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] patchwork_1.1.1    SeuratObject_4.0.4 Seurat_4.1.0

loaded via a namespace (and not attached):
  [1] nlme_3.1-152          matrixStats_0.61.0    spatstat.sparse_2.1-0
  [4] RcppAnnoy_0.0.19      RColorBrewer_1.1-2    httr_1.4.2
  [7] sctransform_0.3.3     tools_4.0.5           utf8_1.2.2
 [10] R6_2.5.1              irlba_2.3.5           rpart_4.1-15
 [13] KernSmooth_2.23-18    uwot_0.1.11           mgcv_1.8-34
 [16] DBI_1.1.2             lazyeval_0.2.2        colorspace_2.0-2
 [19] tidyselect_1.1.1      gridExtra_2.3         compiler_4.0.5
 [22] cli_3.1.1             plotly_4.10.0         labeling_0.4.2
 [25] scales_1.1.1          lmtest_0.9-39         spatstat.data_2.1-2
 [28] ggridges_0.5.3        pbapply_1.5-0         goftest_1.2-3
 [31] stringr_1.4.0         digest_0.6.29         spatstat.utils_2.3-0
 [34] pkgconfig_2.0.3       htmltools_0.5.2       parallelly_1.30.0
 [37] fastmap_1.1.0         htmlwidgets_1.5.4     rlang_1.0.1
 [40] shiny_1.7.1           farver_2.1.0          generics_0.1.2
 [43] zoo_1.8-9             jsonlite_1.7.3        ica_1.0-2
 [46] dplyr_1.0.8           magrittr_2.0.2        Matrix_1.4-0
 [49] Rcpp_1.0.8            munsell_0.5.0         fansi_1.0.2
 [52] abind_1.4-5           reticulate_1.24       lifecycle_1.0.1
 [55] stringi_1.7.6         MASS_7.3-53.1         Rtsne_0.15
 [58] plyr_1.8.6            grid_4.0.5            parallel_4.0.5
 [61] listenv_0.8.0         promises_1.2.0.1      ggrepel_0.9.1
 [64] crayon_1.4.2          miniUI_0.1.1.1        deldir_1.0-6
 [67] lattice_0.20-41       cowplot_1.1.1         splines_4.0.5
 [70] tensor_1.5            pillar_1.7.0          igraph_1.2.11
 [73] spatstat.geom_2.3-1   future.apply_1.8.1    reshape2_1.4.4
 [76] codetools_0.2-18      leiden_0.3.9          glue_1.6.1
 [79] data.table_1.14.2     png_0.1-7             vctrs_0.3.8
 [82] httpuv_1.6.5          gtable_0.3.0          RANN_2.6.1
 [85] purrr_0.3.4           spatstat.core_2.3-2   polyclip_1.10-0
 [88] tidyr_1.2.0           scattermore_0.7       future_1.23.0
 [91] assertthat_0.2.1      ggplot2_3.3.5         mime_0.12
 [94] xtable_1.8-4          later_1.3.0           survival_3.2-10
 [97] viridisLite_0.4.0     tibble_3.1.6          cluster_2.1.1
[100] globals_0.14.0        fitdistrplus_1.1-6    ellipsis_0.3.2
[103] ROCR_1.0-11

[yuhanH]

Thanks for posting this bug. We will fix it soon.

[QueenieBear]

same question😭

[yuhanH]

hi @QueenieBear
This bug is fixed in the latest develop branch.

[QueenieBear]

Oh thanks a lot for your reply！

…

On Jul 5, 2022, at 11:31 PM, Yuhan Hao ***@***.***> wrote:  hi @QueenieBear This bug is fixed in the latest develop branch. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.