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LP.5+N:G200D+Orf3a:K16N+S:K182N(13 seqs, 10 places) #2314

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xz-keg opened this issue Dec 30, 2024 · 2 comments
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LP.5+N:G200D+Orf3a:K16N+S:K182N(13 seqs, 10 places) #2314

xz-keg opened this issue Dec 30, 2024 · 2 comments

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@xz-keg
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xz-keg commented Dec 30, 2024

LP.5+G28872A(N:G200D)+G25440C(Orf3a:K16N)+A22108C(S:K182N)

GISAID query: G28872A, G25440C,A22108C
GISAID supplementary query: G28872A, G25440C, A7516G,-22108

No. of seqs: 12(USA 4(AZ,NY,LA) Canada 2 (AB,ON) Japan 2 UK 3(England, Scotland) Oman 1)

First: EPI_ISL_19313328, England, 2024-7-27
Latest: EPI_ISL_19634773, USA-LA, 2024-12-13

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@FedeGueli
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Thx @xz-keg did you notice that there has been quite a big upload from RUssia belonging to the sibling branch of this ?
Query: A10344G,C4999T
see: #1893

cc @corneliusroemer i think designating these two branches with N:G200D as first step and then Orf3a:K16N for one and orf1a:K3360R for the other could be good.
tree:
Screenshot 2024-12-30 alle 08 40 17
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_45c10_24d780.json?label=id:node_7412239

@xz-keg xz-keg changed the title LP.5+N:G200D+Orf3a:K16N+S:K182N(12 seqs, 9 places) LP.5+N:G200D+Orf3a:K16N+S:K182N(13 seqs, 10 places) Jan 6, 2025
@xz-keg
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xz-keg commented Jan 6, 2025

+1 Canada-sK

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