KP.1.1.3 got S:K478T( 28, 2 places)

[FedeGueli]

Edited on October 4:
Now Usher shows many branches of KP.1.1.3 in one only tree. Hard to find a credible query for this, but ushering from this proposal could be enough to track the whole thing.

Original proposal:
S:K478T is now trending globally even if its exact share is not easy to establish due the confounding of missing coverage.

Here i want to propose a mini saltation S:K478T lineage under KP.1.1.3

KP.1.1.3 > S:K478T (A22995C rev), Orf1a:H919Y (C3020T), C3787T, ORF1a:I2076V (A6491G), C6628T, Orf1b:A241T (G14188A),Orf1b:F1557L (T18136C), T26130C
Query: C3020T, C3787T, A6491G
Samples: 6 ( 3/6 sampled in August)
Country : 1 US (Iowa, Colorado)
Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_635b7_36c130.json?label=id:node_7059171

[FedeGueli]

10 Nevada

[FedeGueli]

25 Ontario

[FedeGueli]

recent samples are Ontario Only closing this

[FedeGueli]

Now USher collects many branches of KP.1.1.3 + S:k478T inn one only tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice4_genome_test_3e7c_fe30a0.json?label=id:node_7283985

Hard to find a query for it

[xz-keg]

designated LP.5 via cov-lineages/pango-designation@9db833c

[FedeGueli]

There is a second LP.5 branch found by the query : A10344G,C4999T
and it is defined by N:G200D and Orf1a:K3360R

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_2fa18_6331b0.json?label=id:node_7401269