Merge Roys changes #65
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andrewjpage
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…nges Merge Roys changes Former-commit-id: fbc7700
andrewjpage
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Feb 1, 2019
Merge Roys changes Former-commit-id: fbc7700
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Merges in changes from PR #64
Supports new style samtools sort syntax and multithreading. Switch for 'essentiality' experiments.