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22 changes: 0 additions & 22 deletions _autosummary/deltametrics.mobility.calculate_channelized_response_variance.html
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Expand Up @@ -92,28 +92,6 @@ <h1>deltametrics.mobility.calculate_channelized_response_variance<a class="heade
</dd>
</dl>
<p class="rubric">Examples</p>
<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="c1"># Load overhead imagery sample data from Savi et al 2020</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">img</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">sample_data</span><span class="o">.</span><span class="n">savi2020</span><span class="p">()</span>
<span class="gp">&gt;&gt;&gt; </span><span class="c1"># Calculate the CRV on the &quot;Red&quot; band</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">crv_mag</span><span class="p">,</span> <span class="n">slopes</span><span class="p">,</span> <span class="n">crv</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">mobility</span><span class="o">.</span><span class="n">calculate_channelized_response_variance</span><span class="p">(</span>
<span class="gp">... </span> <span class="n">img</span><span class="p">[</span><span class="s1">&#39;red&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="n">threshold</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
<span class="gp">... </span> <span class="n">normalize_input</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">normalize_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="c1"># plot the results</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">13</span><span class="p">,</span> <span class="mi">5</span><span class="p">))</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">i0</span> <span class="o">=</span> <span class="n">ax</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">crv_mag</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">ax</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">set_title</span><span class="p">(</span><span class="s1">&#39;CRV Magnitude&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">dm</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">append_colorbar</span><span class="p">(</span><span class="n">i0</span><span class="p">,</span> <span class="n">ax</span><span class="o">=</span><span class="n">ax</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">s_ex</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">slopes</span><span class="o">.</span><span class="n">min</span><span class="p">()),</span> <span class="n">slopes</span><span class="o">.</span><span class="n">max</span><span class="p">()])</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">i1</span> <span class="o">=</span> <span class="n">ax</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">slopes</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="o">*</span><span class="n">s_ex</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">s_ex</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;PuOr&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">ax</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">set_title</span><span class="p">(</span><span class="s1">&#39;CRV Slopes&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">dm</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">append_colorbar</span><span class="p">(</span><span class="n">i1</span><span class="p">,</span> <span class="n">ax</span><span class="o">=</span><span class="n">ax</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">i2</span> <span class="o">=</span> <span class="n">ax</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">crv</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;seismic&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">ax</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">set_title</span><span class="p">(</span><span class="s1">&#39;Directional CRV&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">dm</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">append_colorbar</span><span class="p">(</span><span class="n">i2</span><span class="p">,</span> <span class="n">ax</span><span class="o">=</span><span class="n">ax</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">fig</span><span class="o">.</span><span class="n">suptitle</span><span class="p">(</span><span class="s1">&#39;CRV of Red band from imagery from Savi et al 2020&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
</pre></div>
</div>
<p>(<a class="reference download internal" download="" href="../_downloads/06e5f0d11400d697abe97b509b593305/deltametrics-mobility-calculate_channelized_response_variance-1.png"><code class="xref download docutils literal notranslate"><span class="pre">png</span></code></a>, <a class="reference download internal" download="" href="../_downloads/ab176f9f9533cc84281990a5f99ac44c/deltametrics-mobility-calculate_channelized_response_variance-1.hires.png"><code class="xref download docutils literal notranslate"><span class="pre">hires.png</span></code></a>)</p>
<figure class="align-default">
<img alt="../_images/deltametrics-mobility-calculate_channelized_response_variance-1.png" class="plot-directive" src="../_images/deltametrics-mobility-calculate_channelized_response_variance-1.png" />
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16 changes: 0 additions & 16 deletions _autosummary/deltametrics.mobility.channel_presence.html
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Expand Up @@ -73,22 +73,6 @@ <h1>deltametrics.mobility.channel_presence<a class="headerlink" href="#deltametr
</dd>
</dl>
<p class="rubric">Examples</p>
<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">golfcube</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">sample_data</span><span class="o">.</span><span class="n">golf</span><span class="p">()</span>
<span class="gp">&gt;&gt;&gt; </span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">golfcube</span><span class="p">[</span><span class="s1">&#39;eta&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="o">...</span><span class="p">])</span>
<span class="gp">&gt;&gt;&gt; </span><span class="c1"># calculate channel masks/presence over final 5 timesteps</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">chmap</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="mi">5</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">))</span> <span class="c1"># initialize channel map</span>
<span class="gp">&gt;&gt;&gt; </span><span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="o">-</span><span class="mi">5</span><span class="p">,</span> <span class="mi">0</span><span class="p">):</span>
<span class="gp">... </span> <span class="n">chmap</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="o">...</span><span class="p">]</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">mask</span><span class="o">.</span><span class="n">ChannelMask</span><span class="p">(</span>
<span class="gp">... </span> <span class="n">golfcube</span><span class="p">[</span><span class="s1">&#39;eta&#39;</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="o">...</span><span class="p">],</span> <span class="n">golfcube</span><span class="p">[</span><span class="s1">&#39;velocity&#39;</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="o">...</span><span class="p">],</span>
<span class="gp">... </span> <span class="n">elevation_threshold</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">flow_threshold</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span><span class="o">.</span><span class="n">mask</span>
<span class="gp">&gt;&gt;&gt;</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">fig</span><span class="p">,</span> <span class="n">ax</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">golfcube</span><span class="o">.</span><span class="n">quick_show</span><span class="p">(</span><span class="s1">&#39;eta&#39;</span><span class="p">,</span> <span class="n">ax</span><span class="o">=</span><span class="n">ax</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="c1"># final delta</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">p</span> <span class="o">=</span> <span class="n">ax</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">dm</span><span class="o">.</span><span class="n">mobility</span><span class="o">.</span><span class="n">channel_presence</span><span class="p">(</span><span class="n">chmap</span><span class="p">),</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;Blues&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">dm</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">append_colorbar</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">ax</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Channelized Time&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
</pre></div>
</div>
<p>(<a class="reference download internal" download="" href="../_downloads/5b1dad0923345c208299280ef3b84e66/deltametrics-mobility-channel_presence-1.png"><code class="xref download docutils literal notranslate"><span class="pre">png</span></code></a>, <a class="reference download internal" download="" href="../_downloads/3486b44c6f01e4418607958bda93a475/deltametrics-mobility-channel_presence-1.hires.png"><code class="xref download docutils literal notranslate"><span class="pre">hires.png</span></code></a>)</p>
<figure class="align-default">
<img alt="../_images/deltametrics-mobility-channel_presence-1.png" class="plot-directive" src="../_images/deltametrics-mobility-channel_presence-1.png" />
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2 changes: 1 addition & 1 deletion searchindex.js
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