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Merge: 252fc58 a024fbe Author: John Jakeman <[email protected]> Merge remote-tracking branch 'origin/devel'
sandialabs · Feb 22, 2024 · 02ae522 · 02ae522
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diff --git a/.gitignore b/.gitignore
@@ -3,7 +3,6 @@
 *~
 *.so
 *.c
-*.html
 *.pdf
 *.npz
 *.pkl

diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/_downloads/97a1de59bce682890841bb846e3dd09c/auto_tutorials_jupyter.zip b/_downloads/97a1de59bce682890841bb846e3dd09c/auto_tutorials_jupyter.zip
diff --git a/_downloads/cab7a090c4183ca69dc0cd84d3b04413/auto_tutorials_python.zip b/_downloads/cab7a090c4183ca69dc0cd84d3b04413/auto_tutorials_python.zip
diff --git a/_images/sphx_glr_plot_ensemble_selection_001.png b/_images/sphx_glr_plot_ensemble_selection_001.png
diff --git a/_images/sphx_glr_plot_ensemble_selection_003.png b/_images/sphx_glr_plot_ensemble_selection_003.png
diff --git a/_images/sphx_glr_plot_ensemble_selection_004.png b/_images/sphx_glr_plot_ensemble_selection_004.png
diff --git a/_images/sphx_glr_plot_ensemble_selection_thumb.png b/_images/sphx_glr_plot_ensemble_selection_thumb.png
diff --git a/_images/sphx_glr_plot_paper_demo_006.png b/_images/sphx_glr_plot_paper_demo_006.png
diff --git a/_images/sphx_glr_plot_paper_demo_007.png b/_images/sphx_glr_plot_paper_demo_007.png
diff --git a/_modules/pyapprox/multifidelity/factory.html b/_modules/pyapprox/multifidelity/factory.html
diff --git a/_modules/pyapprox/multifidelity/visualize.html b/_modules/pyapprox/multifidelity/visualize.html
diff --git a/_sources/auto_examples/plot_barycentric_interpolation.rst.txt b/_sources/auto_examples/plot_barycentric_interpolation.rst.txt
@@ -106,7 +106,7 @@ the number of variables
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.045 seconds)
+   **Total running time of the script:** ( 0 minutes  0.046 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_barycentric_interpolation.py:

diff --git a/_sources/auto_examples/plot_interface.rst.txt b/_sources/auto_examples/plot_interface.rst.txt
@@ -94,7 +94,7 @@ The :class:`~pyapprox.interface.wrappers.WorkTrackingModel` has an attribute :cl
 
  .. code-block:: none
 
-    {(0.0,): [0.05384230613708496, 0.03567171096801758, 0.046114206314086914, 0.04846787452697754, 0.03335690498352051, 0.05100297927856445, 0.04039502143859863, 0.02930903434753418, 0.028896093368530273, 0.010175943374633789]}
+    {(0.0,): [0.048805952072143555, 0.03070211410522461, 0.04109311103820801, 0.041719913482666016, 0.035761117935180664, 0.048932790756225586, 0.031188011169433594, 0.02958083152770996, 0.02797102928161621, 0.00882577896118164]}
 
 
 
@@ -119,7 +119,7 @@ We can also call the work tracker to query the median cost for a model with a gi
 
  .. code-block:: none
 
-    [0.03803337]
+    [0.03347456]
 
 
 
@@ -221,8 +221,8 @@ Again we can query the execution times of each model
 
  .. code-block:: none
 
-    {(0.0,): [0.04745125770568848, 0.03804421424865723, 0.00721287727355957, 0.03682303428649902, 0.0058078765869140625], (1.0,): [0.06682920455932617, 0.0755620002746582, 0.06383419036865234, 0.07273602485656738, 0.08753705024719238]}
-    [0.03682303 0.07273602]
+    {(0.0,): [0.04628872871398926, 0.03537106513977051, 0.006219148635864258, 0.039826393127441406, 0.005051851272583008], (1.0,): [0.06666088104248047, 0.0735940933227539, 0.06233668327331543, 0.06756019592285156, 0.08830785751342773]}
+    [0.03537107 0.0675602 ]
 
 
 
@@ -321,8 +321,8 @@ be used with WorkTrackingModel using the sequence of wrappers below.
 
  .. code-block:: none
 
-    With 1 threads that took 0.5262501239776611 seconds
-    With 4 threads that took 2.020951986312866 seconds
+    With 1 threads that took 0.4949309825897217 seconds
+    With 4 threads that took 1.7938449382781982 seconds
 
 
 
@@ -349,8 +349,8 @@ costs are still being recorded correctly
 
     WorkTracker Cost Summary
     Funtion ID Median Cost
-    (0.0,)     0.03803455829620361
-    (1.0,)     0.07765007019042969
+    (0.0,)     0.02837395668029785
+    (1.0,)     0.07239508628845215
 
 
 
@@ -381,7 +381,7 @@ sphinx_gallery_thumbnail_path = './figures/cantilever-beam.png'
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  9.004 seconds)
+   **Total running time of the script:** ( 0 minutes  8.180 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_interface.py:

diff --git a/_sources/auto_examples/plot_low_discrepancy_quadrature.rst.txt b/_sources/auto_examples/plot_low_discrepancy_quadrature.rst.txt
@@ -163,7 +163,7 @@ then request 200 samples while resuing the first 100.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.044 seconds)
+   **Total running time of the script:** ( 0 minutes  0.047 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_low_discrepancy_quadrature.py:

diff --git a/...rces/auto_examples/plot_multivariate_piecewise_polynomial_interpolation.rst.txt b/...rces/auto_examples/plot_multivariate_piecewise_polynomial_interpolation.rst.txt
@@ -63,7 +63,7 @@ Here levels specifies the level of each 1D grid
  .. code-block:: none
 
 
-    <matplotlib.contour.QuadContourSet object at 0x146c23340>
+    <matplotlib.contour.QuadContourSet object at 0x138ebf1c0>
 
 
 
@@ -89,7 +89,7 @@ To plot the difference between the interpolant and the target function use
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.092 seconds)
+   **Total running time of the script:** ( 0 minutes  0.093 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_multivariate_piecewise_polynomial_interpolation.py:

diff --git a/_sources/auto_examples/plot_paper_demo.rst.txt b/_sources/auto_examples/plot_paper_demo.rst.txt
@@ -200,7 +200,7 @@ prints the median execution time of the model.
 
  .. code-block:: none
 
-    [0.03084362]
+    [0.02805579]
 
 
 
@@ -547,12 +547,12 @@ that we do not know the value of the observations.
 
     Running 1000 outer model evaluations
     Predicted observation bounds 14.477297168295355 1.1388690449350853
-    Evaluations took 12.62476396560669
+    Evaluations took 12.961029767990112
     Running 1000 inner model evaluations
-    Evaluations took 12.516699075698853
-    Computing utilities in serial took 0.2389240264892578
-    Computing utilities in serial took 0.02367711067199707
-    Computing utilities in serial took 0.03195381164550781
+    Evaluations took 13.260978937149048
+    Computing utilities in serial took 0.2432870864868164
+    Computing utilities in serial took 0.02371382713317871
+    Computing utilities in serial took 0.03223705291748047
     [[0.0954915  0.42178277 0.42178277]
      [0.05449674 0.85355339 0.85355339]]
 
@@ -714,7 +714,7 @@ for each run
 
  .. code-block:: none
 
-    Predicted variance tensor([[7.5676e-06]])
+    Predicted variance tensor([[7.6507e-06]])
 
 
 
@@ -780,7 +780,7 @@ is ready to actually estimate the mean QoI they can use
  .. code-block:: none
 
     Benchmark(fun, variable, get_num_degrees_of_freedom, config_var_trans, model_ensemble, funs)
-    Mean QoI [0.50196224]
+    Mean QoI [0.50525131]
 
 
 
@@ -794,7 +794,7 @@ References
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 2 minutes  10.244 seconds)
+   **Total running time of the script:** ( 2 minutes  13.459 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_paper_demo.py:

diff --git a/_sources/auto_examples/plot_parameter_sweeps.rst.txt b/_sources/auto_examples/plot_parameter_sweeps.rst.txt
@@ -101,7 +101,7 @@ aprameter sweeps
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.122 seconds)
+   **Total running time of the script:** ( 0 minutes  0.123 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_parameter_sweeps.py:

diff --git a/_sources/auto_examples/plot_pde_convergence.rst.txt b/_sources/auto_examples/plot_pde_convergence.rst.txt
@@ -454,42 +454,42 @@ First plot the evolution of the PDE for a realization of the model inputs
      </style>
 
      <div class="animation">
-       <img id="_anim_img1d65300f187849b7899254eaaead3571">
+       <img id="_anim_img6414a722975744a9b8b911ddee57e2db">
        <div class="anim-controls">
-         <input id="_anim_slider1d65300f187849b7899254eaaead3571" type="range" class="anim-slider"
+         <input id="_anim_slider6414a722975744a9b8b911ddee57e2db" type="range" class="anim-slider"
                 name="points" min="0" max="1" step="1" value="0"
-                oninput="anim1d65300f187849b7899254eaaead3571.set_frame(parseInt(this.value));">
+                oninput="anim6414a722975744a9b8b911ddee57e2db.set_frame(parseInt(this.value));">
          <div class="anim-buttons">
-           <button title="Decrease speed" aria-label="Decrease speed" onclick="anim1d65300f187849b7899254eaaead3571.slower()">
+           <button title="Decrease speed" aria-label="Decrease speed" onclick="anim6414a722975744a9b8b911ddee57e2db.slower()">
                <i class="fa fa-minus"></i></button>
-           <button title="First frame" aria-label="First frame" onclick="anim1d65300f187849b7899254eaaead3571.first_frame()">
+           <button title="First frame" aria-label="First frame" onclick="anim6414a722975744a9b8b911ddee57e2db.first_frame()">
              <i class="fa fa-fast-backward"></i></button>
-           <button title="Previous frame" aria-label="Previous frame" onclick="anim1d65300f187849b7899254eaaead3571.previous_frame()">
+           <button title="Previous frame" aria-label="Previous frame" onclick="anim6414a722975744a9b8b911ddee57e2db.previous_frame()">
                <i class="fa fa-step-backward"></i></button>
-           <button title="Play backwards" aria-label="Play backwards" onclick="anim1d65300f187849b7899254eaaead3571.reverse_animation()">
+           <button title="Play backwards" aria-label="Play backwards" onclick="anim6414a722975744a9b8b911ddee57e2db.reverse_animation()">
                <i class="fa fa-play fa-flip-horizontal"></i></button>
-           <button title="Pause" aria-label="Pause" onclick="anim1d65300f187849b7899254eaaead3571.pause_animation()">
+           <button title="Pause" aria-label="Pause" onclick="anim6414a722975744a9b8b911ddee57e2db.pause_animation()">
                <i class="fa fa-pause"></i></button>
-           <button title="Play" aria-label="Play" onclick="anim1d65300f187849b7899254eaaead3571.play_animation()">
+           <button title="Play" aria-label="Play" onclick="anim6414a722975744a9b8b911ddee57e2db.play_animation()">
                <i class="fa fa-play"></i></button>
-           <button title="Next frame" aria-label="Next frame" onclick="anim1d65300f187849b7899254eaaead3571.next_frame()">
+           <button title="Next frame" aria-label="Next frame" onclick="anim6414a722975744a9b8b911ddee57e2db.next_frame()">
                <i class="fa fa-step-forward"></i></button>
-           <button title="Last frame" aria-label="Last frame" onclick="anim1d65300f187849b7899254eaaead3571.last_frame()">
+           <button title="Last frame" aria-label="Last frame" onclick="anim6414a722975744a9b8b911ddee57e2db.last_frame()">
                <i class="fa fa-fast-forward"></i></button>
-           <button title="Increase speed" aria-label="Increase speed" onclick="anim1d65300f187849b7899254eaaead3571.faster()">
+           <button title="Increase speed" aria-label="Increase speed" onclick="anim6414a722975744a9b8b911ddee57e2db.faster()">
                <i class="fa fa-plus"></i></button>
          </div>
-         <form title="Repetition mode" aria-label="Repetition mode" action="#n" name="_anim_loop_select1d65300f187849b7899254eaaead3571"
+         <form title="Repetition mode" aria-label="Repetition mode" action="#n" name="_anim_loop_select6414a722975744a9b8b911ddee57e2db"
                class="anim-state">
-           <input type="radio" name="state" value="once" id="_anim_radio1_1d65300f187849b7899254eaaead3571"
+           <input type="radio" name="state" value="once" id="_anim_radio1_6414a722975744a9b8b911ddee57e2db"
                   >
-           <label for="_anim_radio1_1d65300f187849b7899254eaaead3571">Once</label>
-           <input type="radio" name="state" value="loop" id="_anim_radio2_1d65300f187849b7899254eaaead3571"
+           <label for="_anim_radio1_6414a722975744a9b8b911ddee57e2db">Once</label>
+           <input type="radio" name="state" value="loop" id="_anim_radio2_6414a722975744a9b8b911ddee57e2db"
                   checked>
-           <label for="_anim_radio2_1d65300f187849b7899254eaaead3571">Loop</label>
-           <input type="radio" name="state" value="reflect" id="_anim_radio3_1d65300f187849b7899254eaaead3571"
+           <label for="_anim_radio2_6414a722975744a9b8b911ddee57e2db">Loop</label>
+           <input type="radio" name="state" value="reflect" id="_anim_radio3_6414a722975744a9b8b911ddee57e2db"
                   >
-           <label for="_anim_radio3_1d65300f187849b7899254eaaead3571">Reflect</label>
+           <label for="_anim_radio3_6414a722975744a9b8b911ddee57e2db">Reflect</label>
          </form>
        </div>
      </div>
@@ -499,9 +499,9 @@ First plot the evolution of the PDE for a realization of the model inputs
        /* Instantiate the Animation class. */
        /* The IDs given should match those used in the template above. */
        (function() {
-         var img_id = "_anim_img1d65300f187849b7899254eaaead3571";
-         var slider_id = "_anim_slider1d65300f187849b7899254eaaead3571";
-         var loop_select_id = "_anim_loop_select1d65300f187849b7899254eaaead3571";
+         var img_id = "_anim_img6414a722975744a9b8b911ddee57e2db";
+         var slider_id = "_anim_slider6414a722975744a9b8b911ddee57e2db";
+         var loop_select_id = "_anim_loop_select6414a722975744a9b8b911ddee57e2db";
          var frames = new Array(43);
 
        frames[0] = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAyAAAAJYCAYAAACadoJwAAAAOXRFWHRTb2Z0d2FyZQBNYXRwbG90\
@@ -31286,7 +31286,7 @@ First plot the evolution of the PDE for a realization of the model inputs
          /* set a timeout to make sure all the above elements are created before
             the object is initialized. */
          setTimeout(function() {
-             anim1d65300f187849b7899254eaaead3571 = new Animation(frames, img_id, slider_id, 46.0,
+             anim6414a722975744a9b8b911ddee57e2db = new Animation(frames, img_id, slider_id, 46.0,
                                       loop_select_id);
          }, 0);
        })()
@@ -31344,7 +31344,7 @@ must be called inside
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  54.492 seconds)
+   **Total running time of the script:** ( 0 minutes  52.918 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_pde_convergence.py:

diff --git a/_sources/auto_examples/plot_setup_model.rst.txt b/_sources/auto_examples/plot_setup_model.rst.txt
@@ -194,7 +194,7 @@ The function :func:`pyapprox.interface.wrappers.evaluate_1darray_function_on_2d_
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.017 seconds)
+   **Total running time of the script:** ( 0 minutes  0.021 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_setup_model.py:

diff --git a/_sources/auto_examples/plot_sparse_grid_uq.rst.txt b/_sources/auto_examples/plot_sparse_grid_uq.rst.txt
@@ -131,7 +131,7 @@ PDFs of the output
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.130 seconds)
+   **Total running time of the script:** ( 0 minutes  0.131 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_sparse_grid_uq.py:

diff --git a/_sources/auto_examples/plot_variables.rst.txt b/_sources/auto_examples/plot_variables.rst.txt
@@ -273,7 +273,7 @@ We can also generate samples using Gaussian copulas. First specify the
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  1.904 seconds)
+   **Total running time of the script:** ( 0 minutes  1.924 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_variables.py:

diff --git a/_sources/auto_examples/sg_execution_times.rst.txt b/_sources/auto_examples/sg_execution_times.rst.txt
@@ -6,32 +6,32 @@
 
 Computation times
 =================
-**03:16.268** total execution time for **auto_examples** files:
+**03:17.118** total execution time for **auto_examples** files:
 
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_paper_demo.py` (``plot_paper_demo.py``)                                                                           | 02:10.244 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_paper_demo.py` (``plot_paper_demo.py``)                                                                           | 02:13.459 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_pde_convergence.py` (``plot_pde_convergence.py``)                                                                 | 00:54.492 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_pde_convergence.py` (``plot_pde_convergence.py``)                                                                 | 00:52.918 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_interface.py` (``plot_interface.py``)                                                                             | 00:09.004 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_interface.py` (``plot_interface.py``)                                                                             | 00:08.180 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_variables.py` (``plot_variables.py``)                                                                             | 00:01.904 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_variables.py` (``plot_variables.py``)                                                                             | 00:01.924 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_sparse_grid_uq.py` (``plot_sparse_grid_uq.py``)                                                                   | 00:00.130 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_sparse_grid_uq.py` (``plot_sparse_grid_uq.py``)                                                                   | 00:00.131 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_parameter_sweeps.py` (``plot_parameter_sweeps.py``)                                                               | 00:00.122 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_parameter_sweeps.py` (``plot_parameter_sweeps.py``)                                                               | 00:00.123 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
 | :ref:`sphx_glr_auto_examples_plot_gaussian_quadrature.py` (``plot_gaussian_quadrature.py``)                                                         | 00:00.097 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_multivariate_piecewise_polynomial_interpolation.py` (``plot_multivariate_piecewise_polynomial_interpolation.py``) | 00:00.092 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_multivariate_piecewise_polynomial_interpolation.py` (``plot_multivariate_piecewise_polynomial_interpolation.py``) | 00:00.093 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
 | :ref:`sphx_glr_auto_examples_plot_multiindex_collocation_ex.py` (``plot_multiindex_collocation_ex.py``)                                             | 00:00.065 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_barycentric_interpolation.py` (``plot_barycentric_interpolation.py``)                                             | 00:00.045 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_low_discrepancy_quadrature.py` (``plot_low_discrepancy_quadrature.py``)                                           | 00:00.047 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_low_discrepancy_quadrature.py` (``plot_low_discrepancy_quadrature.py``)                                           | 00:00.044 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_barycentric_interpolation.py` (``plot_barycentric_interpolation.py``)                                             | 00:00.046 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_setup_model.py` (``plot_setup_model.py``)                                                                         | 00:00.017 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_setup_model.py` (``plot_setup_model.py``)                                                                         | 00:00.021 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
 | :ref:`sphx_glr_auto_examples_plot_multifidelity_quadrature.py` (``plot_multifidelity_quadrature.py``)                                               | 00:00.013 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------------------------------------------------------------+-----------+--------+
-Original file line number
+Diff line change
@@ Expand Up / @@ -3,7 +3,6 @@ @@
     *~
     *.so
     *.c
-    *.html
     *.pdf
     *.npz
     *.pkl
@@ Expand Down @@