Merge pull request ESCOMP#13 from ESCOMP/add-github-actions

Create extbuild.yml

.github/workflows/extbuild.yml

@@ -0,0 +1,110 @@
+# This is a basic workflow to help you get started with Actions
+name: extbuild
+# Controls when the action will run. Triggers the workflow on push or pull request
+# events but only for the master branch
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # Build the ESMF library, if the cache contains a previous build it will be used instead
+  build-cdeps:
+    runs-on: ubuntu-latest
+    env:
+      CC: mpicc
+      FC: mpifort
+      CXX: mpicxx
+      CPPFLAGS: "-I/usr/include -I/usr/local/include"
+    steps:
+      - uses: actions/checkout@v2
+      - id: cache-esmf
+        uses: actions/cache@v2
+        with:
+          path: ~/ESMF
+          key: ${{ runner.os }}-ESMF
+      - id: load-env
+        run: sudo apt-get install gfortran wget openmpi-bin netcdf-bin libopenmpi-dev
+
+      - id: build-ESMF
+        if: steps.cache-esmf.outputs.cache-hit != 'true'
+        run: |
+          wget https://github.com/esmf-org/esmf/archive/ESMF_8_1_0_beta_snapshot_25.tar.gz
+          tar -xzvf ESMF_8_1_0_beta_snapshot_25.tar.gz
+          pushd esmf-ESMF_8_1_0_beta_snapshot_25
+          export ESMF_DIR=`pwd`
+          export ESMF_COMM=openmpi
+          export ESMF_YAMLCPP="internal"
+          export ESMF_INSTALL_PREFIX=$HOME/ESMF
+          export ESMF_BOPT=g
+          make
+          make install
+          popd
+      - id: cache-pnetcdf
+        uses: actions/cache@v2
+        with:
+          path: ~/pnetcdf
+          key: ${{ runner.os }}-pnetcdf
+      - name: pnetcdf build
+        if: steps.cache-pnetcdf.outputs.cache-hit != 'true'
+        run: |
+          wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.1.tar.gz
+          tar -xzvf pnetcdf-1.12.1.tar.gz
+          ls -l
+          pushd pnetcdf-1.12.1
+          ./configure --prefix=$HOME/pnetcdf --enable-shared --disable-cxx
+          make
+          make install
+          popd
+      - name: Cache netcdf-fortran
+        id: cache-netcdf-fortran
+        uses: actions/cache@v2
+        with:
+          path: ~/netcdf-fortran
+          key: ${{ runner.os }}-netcdf-fortran
+      - name: netcdf fortran build
+        if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true'
+        run: |
+          sudo apt-get install libnetcdf-dev
+          wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.2.tar.gz
+          tar -xzvf v4.5.2.tar.gz
+          ls -l
+          pushd netcdf-fortran-4.5.2
+          ./configure --prefix=$HOME/netcdf-fortran
+          make
+          make install
+
+      - name: Cache PIO
+        id: cache-PIO
+        uses: actions/cache@v2
+        with:
+          path: ~/pio
+          key: ${{ runner.os }}-pio
+          restore-keys: |
+            ${{ runner.os }}-netcdf-fortran
+            ${{ runner.os }}-pnetcdf
+      - name: Build PIO
+        if: steps.cache-PIO.outputs.cache-hit != 'true'
+        run: |
+          wget https://github.com/NCAR/ParallelIO/releases/download/pio_2_5_1/pio-2.5.1.tar.gz
+          tar -xzvf pio-2.5.1.tar.gz
+          mkdir build-pio
+          pushd build-pio
+          cmake -Wno-dev -DNetCDF_C_LIBRARY=/usr/lib/x86_64-linux-gnu/libnetcdf.so -DNetCDF_C_INCLUDE_DIR=/usr/include -DCMAKE_PREFIX_PATH=/usr -DCMAKE_INSTALL_PREFIX=$HOME/pio -DPIO_HDF5_LOGGING=On -DPIO_USE_MALLOC=On -DPIO_ENABLE_LOGGING=On -DPIO_ENABLE_TIMING=Off -DNetCDF_Fortran_PATH=$HOME/netcdf-fortran -DPnetCDF_PATH=$HOME/pnetcdf ../pio-2.5.1
+          make VERBOSE=1
+          make install
+          popd
+
+      - name: Build CDEPS
+        run: |
+          export ESMFMKFILE=$HOME/ESMF/lib/libg/Linux.gfortran.64.openmpi.default/esmf.mk
+          export PIO=$HOME/pio
+          git submodule init
+          git submodule update
+          mkdir build-cdeps
+          pushd build-cdeps
+          cmake -DCMAKE_BUILD_TYPE=DEBUG -DCMAKE_Fortran_FLAGS="-g -Wall -ffree-form -ffree-line-length-none" ../
+          make VERBOSE=1
+          popd

cime_config/buildlib

@@ -22,7 +22,6 @@ logger = logging.getLogger(__name__)
 def buildlib(bldroot, libroot, case, compname=None):
     if bldroot.endswith("obj") and not compname:
         compname = os.path.basename(os.path.abspath(os.path.join(bldroot,os.pardir)))
-    print "HERE compname is {} libroot={} bldroot={}".format(compname, libroot, bldroot)
 
     if case.get_value("DEBUG"):
         strdebug = "debug"

docn/ocn_comp_nuopc.F90

@@ -521,7 +521,7 @@ subroutine docn_comp_run(importState, exportState, clock, target_ymd, target_tod
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
     case('sst_aquap_analytic')
        call  docn_datamode_aquaplanet_advance(exportstate, model_mesh, sst_option=aquap_option, rc=rc)
-       if (chkerr(rc,__line__,u_file_u)) return
+       if (ChkErr(rc,__LINE__,u_file_u)) return
     case('sst_aquap_constant')
        call  docn_datamode_aquaplanet_advance(exportState, model_mesh, sst_constant_value=sst_constant_value, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return