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changed patient stratifier to patients #178

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wants to merge 73 commits into from
Closed

changed patient stratifier to patients #178

wants to merge 73 commits into from

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enola-dkfz
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Croft and others added 27 commits February 21, 2024 15:00
The changes are really just to test out how Focus is working.
* Reverted to working version of DockerfileWithBuild
* Plaintext build.sh
* New CQL for patient age
* Corrected Observation CQL
* Diagnostics in Rust code
With this commit I have managed to get Observation count to work and have
also implemented the first Observation-related query (pathogen).

Note that I had to change DockerfileWithBuild to fix the Rust image version,
because the build was breaking with "latest".
The "CareTeam hack" is no longer needed, so I can remove the corresponding
CQL.
@enola-dkfz enola-dkfz requested a review from torbrenner October 31, 2024 09:50
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it was my fault, I copied measure from prism where the stratifier is called "patient" to be compatible with the catalogue

enola-dkfz and others added 27 commits December 6, 2024 11:26
Modify DKTK_Strat_SPECIMEN to improve the search more sample centric
additional logging at trace level
@enola-dkfz enola-dkfz closed this Feb 5, 2025
@enola-dkfz enola-dkfz deleted the fix/cql branch February 5, 2025 17:34
@enola-dkfz enola-dkfz restored the fix/cql branch February 5, 2025 17:35
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6 participants