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…hods-15560 * develop: (163 commits) Updated Sage version to 6.2.beta3 fix incorrect permissions for install-sh Prevent python from using system hg and svn during its installation. Do not hardcode the non-posix install program poison proxy environment variables Slight modifications of gap related pkgs SPKG.txt files. * Remove now git recorded old changelog. * Put patches description into subsections. remove nose from dependencies undefine FORTIFY_SOURCE udpate to GAP-4.7.4 reviewer changes with Travis added the affine factorization crystal to the documentation Fix modular exponentiation of polynomials over finite field extensions. Reenable previously failing doctests for modular exponentiation of polynomials over finite field extensions. fix trivial doctest failure apply sparc patch also to libgap add SPARC alignment fix remove duplicated changelog reverted changes in k_tableaux finished affine factorization crystal fixed rep ...
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| Original file line number | Diff line number | Diff line change |
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| @@ -1 +1 @@ | ||
| Sage version 6.2.beta2, released 2014-02-15 | ||
| Sage version 6.2.beta3, released 2014-03-03 |
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| Original file line number | Diff line number | Diff line change |
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@@ -6,7 +6,7 @@ weighted graph. It uses an exact branch-and-bound algorithm recently | |
| developed by Patr Ostergard. | ||
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| == License == | ||
| Cliquer is licensed under the GNU General Public License v2 ( June 1991 ) | ||
| GNU General Public License v2 | ||
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| == SPKG Maintainers == | ||
| Nathann Cohen ([email protected]) | ||
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@@ -18,92 +18,8 @@ http://users.tkk.fi/pat/cliquer.html | |
| == Dependencies == | ||
| * None | ||
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| == TODO == | ||
| * A MAJOR cleanup of this package is required, see #9870, #14349 | ||
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| == Patches == | ||
| * Makefile.patch: Patch the Makefile for Sage. This custom Makefile | ||
| contains Sage specific compilation and linking flags. More | ||
| importantly, we're building cliquer as a dynamic shared library, | ||
| instead of a stand alone program. | ||
| * cl_c.patch, cl_h.patch: Hook into cliquer to access internal | ||
| functions. Could probably be done better (see TODO) | ||
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| == Changelog == | ||
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| === cliquer-1.21.p1 (Volker Braun, Felix Salfelder, 15 July 2013) === | ||
| * Trac #14892: Track all patches, remove unnecessary graph.c.patch | ||
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| === cliquer-1.21.p0 (Nathann Cohen, 4 May 2012) === | ||
| * Solved memory leaks reported on #12905 | ||
| * Incidentally updated Cliquer to version 1.21 | ||
| * Incidentally removed Sage's code that was formerly directly | ||
| inserted in the original files. This code is now inserted during | ||
| installation from patches located in the patches/ folder. A bit | ||
| cleaner. A long way to go. But God this code really is messy and | ||
| full of global variables. | ||
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| === cliquer-1.2.p11 (John Palmieri, 23 March 2012) === | ||
| * #12311: Remove explicit path to testcc.sh in spkg-install. | ||
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| === cliquer-1.2.p10 (Karl-Dieter Crisman, 28 June 2011) === | ||
| * #11547: Make sure that libcliquer.so is copied as both | ||
| .dll and .so files on Cygwin | ||
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| === cliquer-1.2.p9 (Jeroen Demeyer, 4 May 2011) === | ||
| * #11227: Apply workaround also for versions 4.6.1 of gcc, not only | ||
| version 4.6.0. This is to support pre-release versions of | ||
| gcc 4.6.1, the bug should be fixed in the final gcc 4.6.1. | ||
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| === cliquer-1.2.p8 (Jeroen Demeyer, 25 April 2011) === | ||
| * #11227: When compiling with gcc 4.6.0, add compiler flag -fno-ivopts | ||
| to work around a gcc bug. | ||
| * Use `patch` for patching the Makefile and put patches/Makefile.patch | ||
| under hg control. | ||
| * Some minor cleanup of spkg-install and Makefile. | ||
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| === cliquer-1.2.p7 David Kirkby, Leif Leonhardy (14 September 2010) === | ||
| * #9871 Change flags passed to the linker on Solaris to avoid problems with the | ||
| link-editor believing the shared library contains text relocations. This | ||
| problem can be seen on 32-bit builds of Solaris and OpenSolaris using | ||
| /usr/bin/elfdump, but the problems are much more serious on 64-bit | ||
| builds of Solaris - in some cases stopping code from building. | ||
| * Added the linker flag -ztext on Solaris too, as -ztest forces a fatal | ||
| error if any relocations against non-writable, allocatable sections | ||
| remain. This will make it easier to catch any similar bugs in future. | ||
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| === cliquer-1.2.p6 Nathann Cohen, David Kirkby (31 August 2010) === | ||
| * #9766: Additions to SPKG.txt | ||
| - URL of the original website to the SPKG.txt file | ||
| - "Special Update/Build Instructions" section | ||
| - "Dependencies" section | ||
| * Added an entry to SPKG showing when this package was first put into | ||
| Sage. The first mercurial log is dated 17th July 2009. | ||
| * Added a note on to the cliquer-1.2.p0 entry in SPKG.txt that 'scons' | ||
| was no longer used. | ||
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| === cliquer-1.2.p5 Mike Hansen (15 February 2010) === | ||
| * Fixed Trac #8279 to make the cliquer spkg work on Cygwin with the Sage library. | ||
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| === cliquer-1.2.p4 Mike Hansen, William Stein (12 February 2010) === | ||
| * Fixed Trac #7308 to make the cliquer spkg work on Cygwin. | ||
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| === cliquer-1.2.p3 (Peter Jeremy, 2010-01-25) === | ||
| * #7824: add FreeBSD support | ||
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| === cliquer-1.2.p2 (?, ?) === | ||
| * changelog lost to history | ||
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| === cliquer-1.2.p1 Karl-Dieter Crisman, Georg S. Weber (7th October 2009) === | ||
| * fix trac #7115: Re-add support for building cliquer on Mac OS X 10.4 | ||
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| === cliquer-1.2.p0 Minh Van Nguyen (16th September 2009) === | ||
| * Support for building cliquer 1.2 in 64-bit mode on Mac OS X 10.5.x | ||
| and 64-bit openSUSE 11.1. | ||
| * Add custom compilation and linking flags on top of the Makefile of | ||
| cliquer 1.2. | ||
| * Removed dependancy of cliquer on 'scons' | ||
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| === cliquer-1.2 Nathann Cohen (17th July 2009) === | ||
| * First release put into Sage. | ||
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| * Makefile.patch: Patch the Makefile for Sage. Remove hardcoded | ||
| compiler and linker flags, allow flags to be set from spkg-install. | ||
| More importantly, we're building cliquer as a dynamic shared library, | ||
| instead of a stand-alone program. | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1 @@ | ||
| 1.21.p1 | ||
| 1.21.p2 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| #!/usr/bin/env bash | ||
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| if [ "$SAGE_LOCAL" = "" ]; then | ||
| echo "SAGE_LOCAL undefined ... exiting"; | ||
| echo "Maybe run 'sage -sh'?" | ||
| exit 1 | ||
| fi | ||
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| OPTIMIZATION_FLAGS="-O3 -funroll-loops -fomit-frame-pointer" | ||
| # Work around a bug in gcc 4.6.0: http://gcc.gnu.org/bugzilla/show_bug.cgi?id=48774 | ||
| if [ "`testcc.sh $CC`" = GCC ] ; then | ||
| if $CC -dumpversion 2>/dev/null |grep >/dev/null '^4\.6\.[01]' ; then | ||
| echo "Warning: Working around bug in gcc 4.6.0" | ||
| OPTIMIZATION_FLAGS="$OPTIMIZATION_FLAGS -fno-ivopts" | ||
| fi | ||
| fi | ||
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| CFLAGS="$CFLAGS `testcflags.sh -g $OPTIMIZATION_FLAGS -fPIC -KPIC -Wall`" | ||
| CPPFLAGS="$CPPFLAGS -I$SAGE_LOCAL/include" | ||
| LDFLAGS="$LDFLAGS -L$SAGE_LOCAL/lib" | ||
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| # Compile for 64-bit if SAGE64 is set to 'yes'. | ||
| # On 64-bit hardware, we don't need to set this variable to true. A | ||
| # 64-bit cliquer library would be built on such platform. | ||
| if [ "$SAGE64" = yes ]; then | ||
| CFLAGS="$CFLAGS -m64 " | ||
| LDFLAGS="$LDFLAGS -m64 " | ||
| fi | ||
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| # Export everything | ||
| export CFLAGS | ||
| export CPPFLAGS | ||
| export LDFLAGS | ||
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| cd src && $MAKE test |
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