Merge tag '9.2.beta0' into t/29411/make_sagelib_a_script_package

SageMath version 9.2.beta0, Release Date: 2020-05-28

VERSION.txt

@@ -1 +1 @@
-SageMath version 9.1, Release Date: 2020-05-20
+SageMath version 9.2.beta0, Release Date: 2020-05-28

build/bin/sage-build-env-config.in

@@ -87,5 +87,6 @@ export SAGE_PARI_CFG="@SAGE_PARI_CFG@"
 
 export SAGE_GLPK_PREFIX="@SAGE_GLPK_PREFIX@"
 export SAGE_FREETYPE_PREFIX="@SAGE_FREETYPE_PREFIX@"
+export SAGE_SUITESPARSE_PREFIX="@SAGE_SUITESPARSE_PREFIX@"
 
 export SAGE_CONFIGURE_FFLAS_FFPACK="@SAGE_CONFIGURE_FFLAS_FFPACK@"

build/pkgs/4ti2/SPKG.txt

@@ -15,22 +15,3 @@ Matthias Köppe, UC Davis, CA, USA
 == Dependencies ==
 
 GLPK, GMP.
-
-=== 4ti2-1.6.5 (Matthias Köppe, May 19, 2015) ===
- * update to 4ti2 version 1.6.5
- * add spkg-check script
-
-=== 4ti2-1.6.3 (Dima Pasechnik, May 1, 2015) ===
- * update to 4ti2 version 1.6.3 and to new spkg style
-
-=== 4ti2-1.6.2 (Dima Pasechnik, Jul 4, 2014) ===
- * update to 4ti2 version 1.6.2
-
-=== 4ti2-1.6 (Dima Pasechnik, Sept 7, 2013) ===
- * update to 4ti2 version 1.6
- * hg: added stuff to track
- * updated upstream contacts
-
-=== 4ti2.p0 (Marshall Hampton, July 31th, 2009) ===
- * Created a first attempt.
-

build/pkgs/benzene/SPKG.txt

@@ -13,11 +13,3 @@ http://www.grinvin.org/
 == Dependencies ==
  * None
 
-== Changelog ==
-
-=== benzene-20130630 Nico Van Cleemput (10th September 2014) ===
- * #16963: Update for the sage-git directory layout.
-
-=== benzene-20130630 Nico Van Cleemput (30th June 2013) ===
- * First release put into Sage.
-

build/pkgs/boost_cropped/SPKG.txt

@@ -21,22 +21,3 @@ See mailing list page at http://www.boost.org/community/groups.html
 == Dependencies ==
 
 None
-
-== Releases ==
-
-=== boost_cropped-1.58.0 (Emmanuel Charpentier, November 13th, 2015) ===
- * Updated to boost_1_58_0/boost
- * Created spkg-src
-
-=== boost_cropped-1.52.0 (Timo Kluck, February 26th, 2013) ===
- * Drop sage patches; take all upstream headers
-
-   This package contains the complete contents of the directory
-
-       boost_1_52_0/boost
-
-   of the upstream tarball.
-
-=== boost-cropped-1.34.1 (Michael Abshoff, May 15th, 2009) ===
- * Split boost sources off of polybori.spkg
-

build/pkgs/brial/checksums.ini

@@ -1,5 +1,5 @@
 tarball=brial-VERSION.tar.bz2
-sha1=5795c0d73b63e9daa5318b0f22514b7797c59823
-md5=fddbc0cebfbac161de110acf30a6b89d
-cksum=2578889224
+sha1=ea69faff56fb7068536723f3fb5b3583b8467831
+md5=d6c6a01d4fc80062550e02d9185bfbff
+cksum=318826732
 upstream_url=https://github.com/BRiAl/BRiAl/releases/download/VERSION/brial-VERSION.tar.bz2

build/pkgs/brial/package-version.txt

@@ -1 +1 @@
-1.2.5
+1.2.8

build/pkgs/buckygen/SPKG.txt

@@ -13,14 +13,3 @@ http://caagt.ugent.be/buckygen/
 == Dependencies ==
  * None
 
-== Changelog ==
-
-=== buckygen-1.0 (Nico Van Cleemput, 9th September 2014) ===
- * #16945: Update for the sage-git directory layout.
-
-=== buckygen-1.0 (Nico Van Cleemput, 3rd September 2013) ===
- * Fixed error in license info.
-
-=== buckygen-1.0 (Nico Van Cleemput, 25th May 2013) ===
- * First release put into Sage.
-

build/pkgs/combinatorial_designs/SPKG.txt

@@ -19,7 +19,3 @@ Public domain.
 
 N/A
 
-== Changelog ==
-
-== designs-20140630 (Nathann Cohen, 2014-06-30) ==
- * #16541: Table of MOLS

build/pkgs/configure/checksums.ini

@@ -1,4 +1,4 @@
 tarball=configure-VERSION.tar.gz
-sha1=7014628894a64d34dd630591909f38b6f093054c
-md5=1b43ec2c96858d07c693c6a3c7a297db
-cksum=3626783792
+sha1=1c21f6e635a7b999032dfb5e3bd569fca562cead
+md5=b18610cb53599bfff817e4d1f26d09ef
+cksum=763933029

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-765c5cb3e24dd134708eca97e4c52e0221cd94ba
+982d86df0eb7517b9aed2a911e76ed5dd96fe1ac

build/pkgs/conway_polynomials/SPKG.txt

@@ -8,17 +8,3 @@
 
  * Sage library
 
-== Changelog ==
-
-=== conway_polynomials-0.4.p0 (Karl-Dieter Crisman, 13 February 2013) ===
- * #14075: Remove printing of primes while installing
-
-=== conway_polynomials-0.4 (R. Andrew Ohana and William Stein, 18 June 2012) ===
- * #12205: Rewrite database to not use ZODB
-
-=== conway_polynomials-0.3 (R. Andrew Ohana, 18 June 2012) ===
- * #13123: Move SAGE_DATA to SAGE_LOCAL/share/sage/data
-
-=== conway_polynomials-early_versions (unknown, unknown) ===
- * previous version(s)
- * lost to history

build/pkgs/cvxopt/SPKG.txt

@@ -48,93 +48,3 @@ GNU Lesser General Public License, v2.1.  See src/LICENSE for more details.
    spkg, apparently it will need an unclear to me "with seed(..)"
    construct.
 
-== Changelog ==
-
-=== cvxopt-1.1.8 (Dima Pasechnik, 10 Dec 2015) ===
- * #19687: upgrade to version 1.1.8.
-
-=== cvxopt-1.1.7 (Dima Pasechnik, 24 Aug 2014) ===
- * #16874: upgrade to version 1.1.7.
-
-=== cvxopt-1.1.6.p0 (Volker Braun, Jeroen Demeyer, 15 May 2013) ===
- * #12832: upgrade to version 1.1.6.
- * Remove undocumented patch changing int_t to int.
- * Fix BLAS_LIB_DIR on Cygwin and OS X.
-
-=== cvxopt-1.1.5.p0 (Jean-Pierre Flori, 5 December 2012) ===
- * #13799: add back linking dependencies removed by #13160 and needed on Cygwin.
-
-=== cvxopt-1.1.5 (François Bissey, 25 June 2012) ===
- * #13160: update to 1.1.5, drop dense.c patch as it is not needed anymore.
- * rewrite and simplify the patch for setup.py. Keep the necessary linking minimal.
- * First attempt at doc building
-
-=== cvxopt-1.1.4.p1 (Jeroen Demeyer, 3 April 2012) ===
- * Trac #12011: edit cvxopt.h.patch to apply with all GCC versions.
-
-=== cvxopt-1.1.4.p0 (John Palmieri, 31 March 2012) ===
- * Upgrade to version 1.1.4.
- * Trac #12011: apply upstream fix (from 1.1.5) dense.c.patch to fix
-   self-tests on OS X Lion.
-
-=== cvxopt-1.1.3.p1 (Jeroen Demeyer, 23 February 2012) ===
- * Trac #12519: Do not add -lcblas and -latlas on Darwin, since those
-   libraries aren't installed on Darwin.
- * Use patch for patching.
- * Make spkg-check actually fail when there is a failure.
- * Removed useless bits from patches/setup.py.patch
- * Removed useless __init__.py.patch
-
-=== cvxopt-1.1.3 (Dima Pasechnik, Mike Hansen, Harald Schilly, David Kirkby, Peter Jeremy, November, 2010) ===
- * fiddled with the lists of libraries to link, on per Fortran compiler basis.
- * added recognition of g95 directly, rather than by platform.
- * added getting the right -L path to libf95 for g95.
- * #6456 Updated to 1.1.3.
- * Modified setup.py to build correctly under Cygwin.
- * applied P.Jeremy's FreeBSD patch (see #6456)
- * corrected the 64-bit specific int* bug reported by pjeremy
- * turned on GSL extension (this is the default mode for CVXOPT, and GSL is a standard Sage spkg, so
-   this makes perfect sense); this in particular allowed to get rid of strange random seed-related
-   import bugs uncovered by David Kirkby's spkg-check
- * modified spkg-check to report test names, cd to appropriate subdirs, and skip .bin files.
- * corrected the .patch files in patches/ to be in right order --- just run the makepatchfiles
-   script to re-create these files!
- * removed html doc files in src/doc; the .rst doc files are there, so it's a question of
-   rebuilding them
-   (e.g. one can do sage -sh; cd src/doc; make html)
- * included David's shortened and gcc-version targeted Sun-specific patch
-   (comment 88 on #6456); removed sun_complex.h
- * took care of SPKG.txt sections, as mentioned in comment 87 on #6456
- * incorporating building the GLPK extension (track #9598)
- * #9525 Correct the fact that installation of cvxopt will allways
-   report it was
-   successful, even if it failed.
- * Add a spkg-check file, as #9281 listed cvxopt was missing such a file
- * implemented changes requested in comment 28 of track ticket #6456:
-
-   (kept a harmless SAGE_LOCAL check)
-
-   On building cvxopt extensions:
-   the non-required extension are not built;
-   however, it is possible to switch on the dsdp and dsl extensions by
-   flipping the BUILD_..-flags in setup.py (and modifying dirs for dsdp)
-   Remaining extensions were not tested; it should not be hard to have
-   them provided the corresponding libs are there (e.g. parts of Sage)
-
- * modified setup.py to streamline and make it more Sage-like;
-   in particular got rid of f77blas and f95 dependences that
-   are obsolete, since Sage switched to gfortran
- * rebased Solaris-specific patches from cvxopt-0.9 spkg
-   (only cvxopt.h needed to be patched, while the old
-    native cvxopt random framework is now gone (since cvxopt-1.1
-    at least)
- * modified setup.py and src/python/__init__.py
- * moved old patches to patches-old (solaris, ...) for future reference
- * simplifying spkg-install
-
-=== cvxopt-0.9.p8 (Gonzalo Tornaria, June 19th, 2009) ===
- * Replace perl spkg-install with a bash one.
-
-=== cvxopt-0.9.p7 (Michael Abshoff, September 24th, 2008) ===
- * Work around Solaris 10 problem with complex.h
-

build/pkgs/cvxopt/spkg-install.in

@@ -1,10 +1,5 @@
 cd src
 
-# Ensure FreeBSD build finds new, local math.h and complex.h
-if [ "$UNAME" = FreeBSD ]; then
-    export CPPFLAGS="$CPPFLAGS -I$SAGE_LOCAL/include"
-fi
-
 # Stolen from Gentoo
 pkg_libs() {
 	pkg-config --libs-only-l $* | \
@@ -21,8 +16,10 @@ export CVXOPT_BLAS_LIB="$(pkg_libs blas)"
 export CVXOPT_BLAS_LIB_DIR="$(pkg-config --variable=libdir blas)"
 export CVXOPT_LAPACK_LIB="$(pkg_libs lapack)"
 
-export CVXOPT_SUITESPARSE_LIB_DIR="${SAGE_LOCAL}"
-export CVXOPT_SUITESPARSE_INC_DIR="${SAGE_LOCAL}/include"
+if test "x$SAGE_SUITESPARSE_LOCALINSTALL" != "x"; then
+   export CVXOPT_SUITESPARSE_LIB_DIR="${SAGE_LOCAL}"
+   export CVXOPT_SUITESPARSE_INC_DIR="${SAGE_LOCAL}/include"
+fi
 
 export CVXOPT_BUILD_GLPK=1
 export CVXOPT_GLPK_LIB_DIR="${SAGE_LOCAL}"

build/pkgs/database_kohel/SPKG.txt

@@ -8,7 +8,3 @@ Database of modular and Hilbert polynomials.
 
  * David Kohel <[email protected]>
 
-== Changelog ==
-
- * new style package 20160724 (V. Delecroix)
- * initial version 20060803 (D. Kohel and W. Stein)

build/pkgs/database_symbolic_data/SPKG.txt

@@ -32,10 +32,3 @@ GNU General Public License
 
 List patches that need to be applied and what they do
 
-== Changelog ==
-
-=== database_symbolic_data-20070206 (Martin Albrecht, 8 Oct 2013) ===
-
- * SPKG.txt added
- * adapted to new git workflow
-

build/pkgs/dateutil/SPKG.txt

@@ -19,9 +19,3 @@ Home page: http://labix.org/python-dateutil
 * Python
 * Six
 
-== Changelog ==
-
-=== dateutil-2.2 (John H. Palmieri, 20 December 2013) ===
-
- * Trac #14993: initial release.
-

build/pkgs/docutils/SPKG.txt

@@ -24,15 +24,3 @@ None
 
 None
 
-== Changelog ==
-
-=== docutils-0.7.p0 (Jeroen Demeyer, 8 August 2011) ===
- * Trac #11660: Change permissions of files inside /src to world-readable
-
-=== docutils-0.7 (Pablo De Napoli, 24 October 2010) ===
- * Upgrade to latest upstream stable release (trac #10166)
-
-=== docutils-0.5.p0 (undocumented, 25 July 2010) ===
-
-=== docutils-0.5 (Mike Hansen, 15 September 2008) ===
- * Initial version.

build/pkgs/eclib/distros/gentoo.txt

@@ -0,0 +1 @@
+sci-mathematics/eclib[flint]

build/pkgs/elliptic_curves/SPKG.txt

@@ -26,36 +26,3 @@ Includes two databases:
  * sqlite
  * python
 
-== Changelog ==
-
-=== elliptic_curves-0.8.1 (Frédéric Chapoton, 2019-03-01) ===
- * #20717: remove macOS hidden files
-
-=== elliptic_curves-0.8 (Simon Spicer, 2014-10-24) ===
- * #16773: add more examples of high rank curves
-
-=== elliptic_curves-0.7 (R. Andrew Ohana, 2012-05-17) ===
- * #13123: move SAGE_DATA to SAGE_LOCAL/share
-
-=== elliptic_curves-0.6 (R. Andrew Ohana, 2012-03-27) ===
- * #12763: fix permissions for the installed files
-
-=== elliptic_curves-0.5 (Keshav Kini, 2012-03-18) ===
- * #12694: make the spkg contain a src/ directory and track everything else
-
-=== elliptic_curves-0.4 (R. Andrew Ohana, 9 March 2012) ===
- * #12644: reduce the size of the spkg by half
- * use os.path.join and file.xreadlines
-
-=== elliptic_curves-0.3 (R. Andrew Ohana, 9 September 2011) ===
- * Fixed a potential bug in spkg-install script
- * cremona_mini install script now constructs the database from scratch
-
-=== elliptic_curves-0.2 (R. Andrew Ohana, 1 August 2011) ===
- * Updated cremona_mini to use a SQLite3 database
- * Made SPKG follow guidelines
-
-=== elliptic_curves-0.1 (unknown, unknown) ===
- * previous version(s)
- * lost to history
-

build/pkgs/fflas_ffpack/SPKG.txt

@@ -28,13 +28,3 @@ LGPL V2.1 or later
 
  * bash.patch: fix shebang line to "#!/usr/bin/env bash"
 
-== Changelog ==
-
-=== fflas_ffpack-2.2.2 (Clement Pernet, 30 July 2016) ===
- * #13463: add bash.patch, use standard template for SPKG.txt.
-
-=== fflas_ffpack-1.6.0.p0 (Jeroen Demeyer, 5 February 2013) ===
- * #13463: add bash.patch, use standard template for SPKG.txt.
-
-=== fflas_ffpack-1.6.0 (Martin Albrecht, 7 June 2012) ===
- * #12883 new upstream release

build/pkgs/freetype/SPKG.txt

@@ -44,37 +44,3 @@ From the documentation:
 
 See the `dependencies` file.
 
-== Releases ==
-
-Old changes are listed below. For more recent history, see the git repository.
-
-=== freetype-2.5.2.p0 (Emmanuel Charpentier, December 21st 2013) ===
- * #15561: mindless drop-in-place of the current upstream source.
- * Added the license information in the present file.
- * Minor patch to libpng in order to work around a double setjmp setup.
- * buil/deps : freetype depends on libpng to work around a buildbot race condition.
-
-=== freetype-2.3.5.p4 (Simon King, December 11th 2011) ===
- * #12131: Use --libdir, to make the package work on openSUSE
-
-=== freetype-2.3.5.p3 (Mitesh Patel, October 21st 2010) ===
- * #9221, #9896: Increase the patch level to force reinstallation when
-    upgrading to Sage 4.6.  This works around a problem with moved
-    Sage installations.
-
-=== freetype-2.3.5.p2 (David Kirkby, January 2nd 2010) ===
- * #7138 Ensure -m64 gets added on all platforms, not just OS X
-   A better fix will be to remove all the hard-coded -m64 junk
-   and replace by an environment variable CFLAG64, but until
-   sage-env is updated, that will not work, so I've just left it
-   as it has always been, but now working on all platforms if the
-   compiler is gcc.
-=== freetype-2.3.5.p1 (Mike Hansen, June 19th, 2009) ===
- * Applied Peter Jeremy's fix from #5866.
-
-=== freetype-2.3.5.p0 (Michael Abshoff, May 18th, 2008) ===
- * add OSX 64 bit build support
-
-=== freetype-2.3.5 ===
- * details lost to history
-