src/doc/bootstrap: In reference manual show modularized sagelib packa…

…ges separately

build/bin/sage-spkg-info

@@ -9,7 +9,7 @@ PKG_SCRIPTS="$SAGE_ROOT/build/pkgs/$PKG_BASE"
 for ext in rst txt; do
     SPKG_FILE="$PKG_SCRIPTS/SPKG.$ext"
     if [ -f "$SPKG_FILE" ]; then
-        cat "$SPKG_FILE"
+        sed "1,3s/^ *Sage: Open Source Mathematics Software:/$PKG_BASE:/" "$SPKG_FILE"
         break
     fi
 done

src/doc/bootstrap

@@ -100,7 +100,16 @@ Sage depends.  It installs them automatically if it does not find
 equivalent system packages.
 
 EOF
-for PKG_BASE in $(sage-package list --has-file SPKG.rst :standard: | sort); do
+for PKG_BASE in $(sage-package list --has-file SPKG.rst :standard: | grep -v '^sagemath_' | sort); do
+    echo "* :ref:\`spkg_$PKG_BASE\`"
+done >> "$OUTPUT_INDEX"
+cat >> "$OUTPUT_INDEX" <<EOF
+
+Packages of the Modularized Sage Library
+----------------------------------------
+
+EOF
+for PKG_BASE in $(sage-package list --has-file SPKG.rst | grep '^sagemath_' | sort); do
     echo "* :ref:\`spkg_$PKG_BASE\`"
 done >> "$OUTPUT_INDEX"
 cat >> "$OUTPUT_INDEX" <<EOF
@@ -112,7 +121,7 @@ For additional functionality, you can install some of the following
 optional packages.
 
 EOF
-for PKG_BASE in $(sage-package list --has-file SPKG.rst :optional: | sort); do
+for PKG_BASE in $(sage-package list --has-file SPKG.rst :optional: | grep -v '^sagemath_' | sort); do
     echo "* :ref:\`spkg_$PKG_BASE\`"
 done >> "$OUTPUT_INDEX"
 cat >> "$OUTPUT_INDEX" <<EOF
@@ -125,7 +134,7 @@ Some packages that provide additional functionality are marked as
 integration of these packages into the Sage distribution.
 
 EOF
-for PKG_BASE in $(sage-package list --has-file SPKG.rst :experimental: | sort); do
+for PKG_BASE in $(sage-package list --has-file SPKG.rst :experimental: | grep -v '^sagemath_' | sort); do
     echo "* :ref:\`spkg_$PKG_BASE\`"
 done >> "$OUTPUT_INDEX"
 cat >> "$OUTPUT_INDEX" <<EOF
@@ -150,6 +159,7 @@ Packages are in alphabetical order.
 .. toctree::
    :maxdepth: 1
 
+.. default-role:: code
 EOF
 for PKG_BASE in $(sage-package list --has-file SPKG.rst | sort); do
             PKG_SCRIPTS=build/pkgs/$PKG_BASE
@@ -160,3 +170,6 @@ for PKG_BASE in $(sage-package list --has-file SPKG.rst | sort); do
             (echo ".. _spkg_$PKG_BASE:" && echo && OUTPUT_RST=1 sage-spkg-info $PKG_BASE) | sed -e "s|https://github.com/sagemath/sage/issues/\([0-9]*\)|:issue:\`\1\`|g" -e "s|https://arxiv.org/abs/cs/\([0-9]*\)|:arxiv:\`cs/\1\`|g" > "$OUTPUT_DIR"/$PKG_BASE.rst
             echo >> "$OUTPUT_INDEX" "   $PKG_BASE"
 done
+cat >> "$OUTPUT_INDEX" <<EOF
+.. default-role::
+EOF