Version 0.9.1

[SebieF]

10.07.2024 - Version 0.9.1

Maintenance

• Fixing error in type checking for device
• Updating dependencies
• Updating inference examples
• Adding hint for version mismatch in inferencer
• Adding class weights to out.yml if they are calculated

Features

• Improving fallback mechanism of embedder models. Now, cpu mode is exited once there is enough
  RAM again for shorter sequences
• Changing model storage format from .pt to .safetensors.
  Safetensors is safer for model sharing. Legacy .pt format is still supported, and can be converted via

from biotrainer.inference import Inferencer
inferencer, out_file = Inferencer.create_from_out_file(out_file_path="out.yml", allow_torch_pt_loading=True)
inferencer.convert_all_checkpoints_to_safetensors()